Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7526

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7524: 15892 - BLAST putative heatshock protein [Serpula lacrymans var..., at 493543 to 495211 15892 mRNA_7525: 15893 - KOG3425 Uncharacterized conserved protein, at 495321 to 495867 15893 mRNA_7526: 15894 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 495978 to 498115 15894 mRNA_7527: 15895 - K20031 ZDHHC6 palmitoyltransferase ZDHHC6, at 498360 to 499661 15895

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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495,157 - 0.2
495,613 - 15893 mRNA_7525 0.53 -0.5
495,637 + 15893 mRNA_7525 0.58 0.5
495,738 + 15893 mRNA_7525 0.76 0.6
495,756 + 15893 mRNA_7525 0.80 -0.1
495,765 + 15893 mRNA_7525 0.81 1.2
495,890 + 0.3
495,893 + 0.7
495,896 + -0.5
495,897 + 0.8
495,914 - 1.0
495,929 - 0.4
495,935 - -0.3
495,945 - 0.5
495,946 - -0.4
495,951 - 0.6
496,056 - -0.5
496,075 + 2.2
496,091 + -2.4
496,214 - 15894 mRNA_7526 0.11 0.9
496,652 - 15894 mRNA_7526 0.32 -3.9
496,943 + 15894 mRNA_7526 0.45 -1.1
496,945 - 15894 mRNA_7526 0.45 -2.1
497,044 - 15894 mRNA_7526 0.50 0.7
497,154 + 15894 mRNA_7526 0.55 1.1
497,365 + 15894 mRNA_7526 0.65 0.2
497,366 - 15894 mRNA_7526 0.65 0.9
497,619 + 15894 mRNA_7526 0.77 -0.7
497,704 + 15894 mRNA_7526 0.81 0.8
497,967 + 0.4
497,973 - -1.0
498,094 - 0.2
498,246 - -0.5
498,249 - 1.0
498,276 + -0.3
498,577 - 15895 mRNA_7527 0.17 -1.9
498,591 - 15895 mRNA_7527 0.18 0.3
498,595 + 15895 mRNA_7527 0.18 -0.8
498,726 - 15895 mRNA_7527 0.28 2.1
498,762 + 15895 mRNA_7527 0.31 1.5
498,901 - 15895 mRNA_7527 0.42 0.7
499,014 - 15895 mRNA_7527 0.50 0.3