Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7520

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7519: 15887 - HMMPfam-Protoglobin-PF11563, at 481240 to 482191 15887 mRNA_7520: 15888 - K18725 POM152 nucleoporin POM152, at 482849 to 487263 15888 mRNA_7521: 15889 - K18624 MAEA, EMP macrophage erythroblast attacher, at 487379 to 489204 15889

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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481,971 - 15887 mRNA_7519 0.77 1.4
482,206 - 0.0
482,230 - -0.2
482,330 - 1.1
482,350 - 0.1
482,364 - 1.4
482,398 - -0.0
482,423 + 0.8
482,429 - -0.5
482,467 - 0.2
482,481 + 1.0
482,494 - -0.2
482,495 - 0.6
482,504 + -1.2
482,508 + -1.9
482,510 + -1.1
482,517 + -0.3
482,522 + -0.3
482,544 + -0.5
482,561 - 0.1
482,622 - 1.7
482,657 + 0.8
482,664 - 0.7
482,666 - 0.5
482,703 - 0.3
482,710 - 0.3
482,722 - -0.7
482,731 + 0.0
482,734 - 1.0
482,736 - 1.0
482,750 + 0.1
482,847 + -0.7
482,849 - -0.1
482,852 + -2.1
482,863 + -0.4
482,873 + 1.0
482,884 - 0.3
482,891 + -0.5
482,907 + 1.3
482,917 + -0.6
483,066 + -2.5
483,165 + 2.5
483,169 + 0.4
483,231 + 0.9
483,323 - 15888 mRNA_7520 0.11 -0.9
483,439 - 15888 mRNA_7520 0.13 -0.1
483,445 - 15888 mRNA_7520 0.13 -0.2
483,452 - 15888 mRNA_7520 0.14 -1.7
483,771 + 15888 mRNA_7520 0.21 -0.3
484,041 - 15888 mRNA_7520 0.27 0.9
484,044 + 15888 mRNA_7520 0.27 -0.2
484,317 + 15888 mRNA_7520 0.33 0.6
484,802 - 15888 mRNA_7520 0.44 -0.8
485,368 + 15888 mRNA_7520 0.57 -0.5
485,388 + 15888 mRNA_7520 0.58 0.0
485,729 + 15888 mRNA_7520 0.65 2.2
485,995 - 15888 mRNA_7520 0.71 1.2
486,031 - 15888 mRNA_7520 0.72 1.2
486,038 + 15888 mRNA_7520 0.72 0.4
486,886 - 0.5
486,895 - 0.9
487,006 + -0.2
487,029 - -0.5
487,043 + -0.5
487,175 + 0.9
487,176 - -0.4
487,336 - -0.2
487,437 - -0.3
487,474 - 0.1
487,476 + -0.8
487,628 + 15889 mRNA_7521 0.14 -0.2
487,642 - 15889 mRNA_7521 0.14 0.1
487,753 + 15889 mRNA_7521 0.20 2.4
487,758 - 15889 mRNA_7521 0.21 -0.8
487,774 - 15889 mRNA_7521 0.22 2.1
487,779 + 15889 mRNA_7521 0.22 1.7