Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7490

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7489: 15857 - K12351 SMPD2 sphingomyelin phosphodiesterase 2, at 408031 to 409638 15857 mRNA_7490: 15858 - K20167 TBC1D14 TBC1 domain family member 14, at 409726 to 411732 15858 mRNA_7491: 15859 - K19267 qorB NAD(P)H dehydrogenase (quinone), at 411819 to 412834 15859

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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408,908 - 15857 mRNA_7489 0.55 -0.4
409,011 - 15857 mRNA_7489 0.61 0.2
409,089 + 15857 mRNA_7489 0.66 2.1
409,231 + 15857 mRNA_7489 0.75 0.6
409,386 - 15857 mRNA_7489 0.84 0.3
409,501 + 1.5
409,502 + -0.2
409,503 - 0.2
409,507 - -0.4
409,653 - -0.1
409,665 - 1.9
409,669 - 0.3
409,669 + 1.6
409,772 + 2.0
409,803 - 0.4
409,954 + 15858 mRNA_7490 0.11 -0.2
410,091 - 15858 mRNA_7490 0.18 -0.2
410,124 - 15858 mRNA_7490 0.20 -1.4
410,276 + 15858 mRNA_7490 0.27 -1.0
410,675 - 15858 mRNA_7490 0.47 -1.0
410,858 + 15858 mRNA_7490 0.56 0.2
411,007 - 15858 mRNA_7490 0.64 0.6
411,143 + 15858 mRNA_7490 0.71 -1.3
411,566 - 0.2
411,739 + 1.4
411,748 - -0.1
411,765 - 1.0
411,871 - 0.6
411,895 + 1.3
412,000 - 15859 mRNA_7491 0.18 0.3
412,034 + 15859 mRNA_7491 0.21 -0.5
412,036 - 15859 mRNA_7491 0.21 1.0
412,037 + 15859 mRNA_7491 0.21 1.6
412,195 + 15859 mRNA_7491 0.37 -0.4
412,195 + 15859 mRNA_7491 0.37 -0.3
412,195 + 15859 mRNA_7491 0.37 0.7
412,200 - 15859 mRNA_7491 0.38 -0.2
412,461 + 15859 mRNA_7491 0.63 0.6
412,481 - 15859 mRNA_7491 0.65 0.0