Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7486

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7485: 15853 - K08158 MDR1, FLR1, CAF5 MFS transporter, DHA1 family, multidrug resistance protein, at 394901 to 397101 15853 mRNA_7486: 15854 - K08287 E2.7.12.1 dual-specificity kinase, at 397692 to 399920 15854 mRNA_7487: 15855 - K17619 MDP1 magnesium-dependent phosphatase 1, at 400659 to 401356 15855

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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396,834 - 15853 mRNA_7485 0.88 0.0
396,963 + 0.5
397,419 + 0.1
397,569 - 1.5
397,592 + 0.5
397,728 + -1.2
397,810 + -1.1
397,887 - -3.5
398,271 - 15854 mRNA_7486 0.26 -1.2
398,738 + 15854 mRNA_7486 0.47 -0.1
398,899 - 15854 mRNA_7486 0.54 -0.7
399,609 - 15854 mRNA_7486 0.86 -0.9
399,631 + 15854 mRNA_7486 0.87 -2.2
399,743 + -2.2
399,895 + -0.4
399,911 - -0.8
399,912 + -0.6
400,050 - -0.5
400,064 + 0.1
400,070 - -1.1
400,190 - 1.8
400,209 - -0.7
400,211 - 1.0
400,218 + -0.5
400,219 + 1.1
400,225 - -0.5
400,229 - -0.5
400,230 + -1.2
400,230 + 0.8
400,238 + 0.4
400,508 - 1.4
400,667 + 0.6