Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7466

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7465: 15833 - K08518 STXBP5, SRO7_77 syntaxin-binding protein 5, at 340933 to 344642 15833 mRNA_7466: 15834 - K17887 SNX25, MDM1 sorting nexin-25, at 345181 to 349645 15834 mRNA_7467: 15835 - Hypothetical Protein, at 349793 to 351109 15835

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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345,168 + 0.5
345,690 + 15834 mRNA_7466 0.11 0.1
345,893 + 15834 mRNA_7466 0.16 -0.4
345,955 - 15834 mRNA_7466 0.17 -0.1
345,990 + 15834 mRNA_7466 0.18 -0.0
346,107 + 15834 mRNA_7466 0.21 0.6
346,122 - 15834 mRNA_7466 0.21 -1.8
346,398 + 15834 mRNA_7466 0.27 -1.0
346,518 - 15834 mRNA_7466 0.30 0.4
346,969 + 15834 mRNA_7466 0.40 -0.8
347,247 - 15834 mRNA_7466 0.46 2.3
347,426 + 15834 mRNA_7466 0.50 -0.4
347,474 + 15834 mRNA_7466 0.51 0.3
347,650 - 15834 mRNA_7466 0.55 -0.0
347,799 - 15834 mRNA_7466 0.59 1.6
347,874 - 15834 mRNA_7466 0.60 -0.5
348,188 + 15834 mRNA_7466 0.67 1.4
348,415 + 15834 mRNA_7466 0.72 0.1
348,587 - 15834 mRNA_7466 0.76 0.1
348,722 - 15834 mRNA_7466 0.79 -0.8
349,006 + 15834 mRNA_7466 0.86 -0.6
349,279 + -0.8
349,279 + 1.4
349,293 + 0.5
349,391 + 1.6
349,409 + 0.3
349,439 - 0.8
349,449 + 1.9
349,569 - -2.2
349,571 - 3.1
349,579 - -0.1
349,579 - -0.0
349,582 - 1.0
349,725 + 3.1
349,744 + -1.0
349,749 + -1.0
349,904 - 0.5
350,015 - 15835 mRNA_7467 0.17 -0.1
350,022 - 15835 mRNA_7467 0.17 -0.4
350,027 + 15835 mRNA_7467 0.18 -0.2
350,136 + 15835 mRNA_7467 0.26 -0.2
350,315 - 15835 mRNA_7467 0.40 0.5
350,320 + 15835 mRNA_7467 0.40 0.1
350,324 - 15835 mRNA_7467 0.40 -0.3
350,337 - 15835 mRNA_7467 0.41 -0.0
350,486 - 15835 mRNA_7467 0.53 -0.9
350,587 - 15835 mRNA_7467 0.60 2.5
350,617 + 15835 mRNA_7467 0.63 -0.7