Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7461

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7460: 15828 - K00698 CHS1 chitin synthase, at 327508 to 332421 15828 mRNA_7461: 15829 - K08964 mtnB methylthioribulose-1-phosphate dehydratase, at 332906 to 334515 15829 mRNA_7462: 15830 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 334859 to 336377 15830

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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332,378 - 0.1
332,399 - 0.9
332,435 + -3.2
332,538 - 0.4
332,541 - -1.8
332,548 + 0.2
332,565 + -0.1
332,679 - 1.5
332,681 - -0.7
332,682 - -1.1
332,684 + -0.4
332,694 + -1.2
332,707 - 0.3
332,713 - 2.0
332,801 - -0.6
332,824 - 1.6
332,844 + -0.1
332,852 + 0.3
332,862 + -0.7
332,866 + -0.1
332,867 + -0.4
332,881 + -1.0
333,023 - -1.3
333,287 - 15829 mRNA_7461 0.24 0.2
333,309 + 15829 mRNA_7461 0.25 2.4
333,442 - 15829 mRNA_7461 0.33 0.1
333,692 - 15829 mRNA_7461 0.49 -0.9
334,195 - 15829 mRNA_7461 0.80 -1.6
334,323 - 15829 mRNA_7461 0.88 -0.1
334,501 - -0.3
334,605 + 2.2
334,605 + -0.3
334,608 + -0.8
334,624 + 0.1
334,758 - 0.1
334,765 + 0.7
334,771 - -1.1
335,364 + 15830 mRNA_7462 0.33 0.1
335,382 + 15830 mRNA_7462 0.34 0.3
335,503 - 15830 mRNA_7462 0.42 -0.9
335,504 + 15830 mRNA_7462 0.42 -0.6
335,509 + 15830 mRNA_7462 0.43 -0.2