Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7342

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7341: 15709 - KOG4062 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair, at 41862 to 42699 15709 mRNA_7342: 15710 - Hypothetical Protein, at 43163 to 45525 15710 mRNA_7343: 15711 - K04798 pfdB, PFDN6 prefoldin beta subunit, at 45735 to 46573 15711

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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42,238 - 15709 mRNA_7341 0.45 0.5
42,344 + 15709 mRNA_7341 0.58 -1.0
42,392 - 15709 mRNA_7341 0.63 -0.4
42,697 - -0.1
42,701 + 0.3
42,823 - -1.0
42,973 + -0.5
43,061 + -0.1
43,078 - -0.8
43,399 + 0.5
43,712 + 15710 mRNA_7342 0.23 0.7
43,899 - 15710 mRNA_7342 0.31 0.6
43,976 + 15710 mRNA_7342 0.34 1.4
44,353 + 15710 mRNA_7342 0.50 0.9
44,409 - 15710 mRNA_7342 0.53 -0.4
44,409 - 15710 mRNA_7342 0.53 0.8
44,718 + 15710 mRNA_7342 0.66 1.2
44,841 - 15710 mRNA_7342 0.71 -0.3
45,006 + 15710 mRNA_7342 0.78 0.3
45,301 + -0.2
45,302 + -1.0
45,583 + 0.2
45,590 + -0.6
45,728 + 1.4
45,728 + -0.3
46,292 - 15711 mRNA_7343 0.66 0.9