Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7340

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7339: 15707 - HMMPfam-Protein of unknown function (DUF1649)-PF07855, at 38235 to 39594 15707 mRNA_7340: 15708 - K08073 PNKP bifunctional polynucleotide phosphatase/kinase, at 39779 to 41768 15708 mRNA_7341: 15709 - KOG4062 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair, at 41862 to 42699 15709

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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38,891 + 15707 mRNA_7339 0.48 1.2
38,904 - 15707 mRNA_7339 0.49 -0.4
39,308 + 15707 mRNA_7339 0.79 2.1
39,336 + 15707 mRNA_7339 0.81 -1.0
39,347 + 15707 mRNA_7339 0.82 0.9
39,443 + 15707 mRNA_7339 0.89 1.7
39,578 - 0.6
39,604 - 0.1
39,626 + -0.4
39,635 - 1.3
39,640 + 1.2
39,786 + 2.5
40,200 - 15708 mRNA_7340 0.21 -1.8
40,202 - 15708 mRNA_7340 0.21 2.5
40,203 + 15708 mRNA_7340 0.21 0.5
40,249 + 15708 mRNA_7340 0.24 1.0
40,544 + 15708 mRNA_7340 0.38 0.8
41,042 - 15708 mRNA_7340 0.63 2.8
41,059 - 15708 mRNA_7340 0.64 2.0
41,340 - 15708 mRNA_7340 0.78 0.8
41,525 + 15708 mRNA_7340 0.88 -0.1
41,738 + 0.1
41,803 + 2.7
41,934 - -0.1
41,960 + 15709 mRNA_7341 0.12 0.1
42,104 + 15709 mRNA_7341 0.29 -0.1
42,238 - 15709 mRNA_7341 0.45 0.5
42,344 + 15709 mRNA_7341 0.58 -1.0
42,392 - 15709 mRNA_7341 0.63 -0.4
42,697 - -0.1
42,701 + 0.3