Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7320

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1943 to 3763 15689

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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14 + -0.2
14 + 0.4
14 + 0.3
14 + 0.9
22 + -0.4
29 + -0.8
35 + -0.6
45 + 0.2
66 + -0.6
68 + -2.0
71 - -1.1
105 + 0.2
120 - 0.3
120 + -0.9
121 - 0.2
122 - -1.8
126 + -0.3
126 + -0.1
131 - 0.1
135 - 1.0
135 + 1.1
135 + 0.5
135 + 0.1
135 - -0.6
142 - 1.1
148 + 0.1
153 + 0.7
159 - -0.2
159 - 0.2
161 + -0.6
168 - 0.4
195 + 1.2
233 + -0.1
263 + 15688 mRNA_7320 0.11 2.3
267 - 15688 mRNA_7320 0.11 -0.1
301 - 15688 mRNA_7320 0.14 1.4
310 - 15688 mRNA_7320 0.14 0.3
313 + 15688 mRNA_7320 0.15 1.5
313 + 15688 mRNA_7320 0.15 0.1
319 + 15688 mRNA_7320 0.15 0.3
322 - 15688 mRNA_7320 0.15 0.4
340 - 15688 mRNA_7320 0.16 0.6
345 + 15688 mRNA_7320 0.17 -0.1
357 + 15688 mRNA_7320 0.18 1.1
359 + 15688 mRNA_7320 0.18 -0.0
365 - 15688 mRNA_7320 0.18 1.7
401 - 15688 mRNA_7320 0.21 -0.6
401 - 15688 mRNA_7320 0.21 0.0
401 + 15688 mRNA_7320 0.21 -0.1
405 + 15688 mRNA_7320 0.21 -0.4
415 + 15688 mRNA_7320 0.22 -0.5
428 - 15688 mRNA_7320 0.23 -0.1
461 - 15688 mRNA_7320 0.25 -2.1
462 + 15688 mRNA_7320 0.25 0.3
466 - 15688 mRNA_7320 0.25 0.5
482 + 15688 mRNA_7320 0.26 2.2
488 - 15688 mRNA_7320 0.27 1.2
573 - 15688 mRNA_7320 0.33 -0.7
594 - 15688 mRNA_7320 0.34 -0.4
595 + 15688 mRNA_7320 0.34 -0.2
595 + 15688 mRNA_7320 0.34 -0.8
625 - 15688 mRNA_7320 0.36 -0.2
644 + 15688 mRNA_7320 0.38 0.1
644 + 15688 mRNA_7320 0.38 2.0
648 + 15688 mRNA_7320 0.38 0.3
654 - 15688 mRNA_7320 0.38 0.3
654 + 15688 mRNA_7320 0.38 0.6
713 + 15688 mRNA_7320 0.43 -2.1
753 - 15688 mRNA_7320 0.45 2.4
756 - 15688 mRNA_7320 0.46 0.1
763 + 15688 mRNA_7320 0.46 -0.3
765 + 15688 mRNA_7320 0.46 0.6
778 + 15688 mRNA_7320 0.47 0.9
811 - 15688 mRNA_7320 0.49 1.2
921 + 15688 mRNA_7320 0.57 0.9
945 + 15688 mRNA_7320 0.59 0.2
1,059 + 15688 mRNA_7320 0.67 0.1
1,167 + 15688 mRNA_7320 0.74 -0.1
1,174 + 15688 mRNA_7320 0.75 -0.0
1,182 - 15688 mRNA_7320 0.75 0.0
1,196 + 15688 mRNA_7320 0.76 1.2
1,218 + 15688 mRNA_7320 0.78 1.9
1,258 + 15688 mRNA_7320 0.81 2.9
1,326 - 15688 mRNA_7320 0.85 -0.5
1,360 + 15688 mRNA_7320 0.88 0.8
1,366 + 15688 mRNA_7320 0.88 -1.2
1,497 - -0.5
1,518 + 0.5
1,582 + 0.5
1,666 - -0.4
1,675 + 0.5
1,789 - -0.0
1,907 + 1.7
1,929 + -1.3
1,948 + 2.8
2,105 - 0.7
2,297 - 15689 mRNA_7321 0.19 0.1
2,508 - 15689 mRNA_7321 0.31 -0.3
2,521 + 15689 mRNA_7321 0.32 -0.9
2,526 + 15689 mRNA_7321 0.32 -0.3
2,529 - 15689 mRNA_7321 0.32 2.1
2,529 - 15689 mRNA_7321 0.32 -1.6