Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7208

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7207: 15575 - KOG1209 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases, at 1122389 to 1123916 15575 mRNA_7208: 15576 - K03361 CDC4 F-box and WD-40 domain protein CDC4, at 1123960 to 1127394 15576 mRNA_7209: 15577 - K01408 IDE, ide insulysin, at 1127911 to 1131746 15577

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,123,269 - 15575 mRNA_7207 0.58 -0.3
1,123,270 + 15575 mRNA_7207 0.58 0.4
1,123,276 - 15575 mRNA_7207 0.58 -0.4
1,123,405 + 15575 mRNA_7207 0.66 2.4
1,123,576 + 15575 mRNA_7207 0.78 -0.3
1,123,722 + 15575 mRNA_7207 0.87 2.8
1,123,724 - 15575 mRNA_7207 0.87 -0.2
1,123,736 + 15575 mRNA_7207 0.88 -0.0
1,124,076 + -1.1
1,125,088 + 15576 mRNA_7208 0.33 0.1
1,125,252 + 15576 mRNA_7208 0.38 0.2
1,125,282 - 15576 mRNA_7208 0.38 -0.1
1,125,518 + 15576 mRNA_7208 0.45 -2.0
1,125,611 + 15576 mRNA_7208 0.48 -0.3
1,125,621 + 15576 mRNA_7208 0.48 -0.5
1,125,846 + 15576 mRNA_7208 0.55 -1.0
1,125,962 - 15576 mRNA_7208 0.58 -2.4
1,126,278 + 15576 mRNA_7208 0.67 -0.4
1,126,837 + 15576 mRNA_7208 0.84 -1.6
1,126,987 + 15576 mRNA_7208 0.88 -1.5
1,127,425 + 0.5
1,127,454 - -2.4
1,127,563 + -0.9
1,127,718 - -0.3
1,127,731 - -0.4
1,127,744 + -1.5
1,127,859 + 0.4
1,127,865 + 0.2
1,127,870 + -0.3
1,128,005 + 0.8
1,128,014 + 0.7