Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7143

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7142: 15510 - HMMPfam-Domain of unknown function DUF221-PF02714,HMMPfam-Late exocytosis, associated with Golgi transport-PF13967, at 979628 to 983826 15510 mRNA_7143: 15511 - HMMPfam-Protein of unknown function (DUF2421)-PF10334,HMMPfam-Fusaric acid resistance protein-like-PF13515,PRINTS-Brefeldin A-sensitivity protein 4 signature-PR02047,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 984352 to 987514 15511 mRNA_7144: 15512 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 988436 to 990722 15512

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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983,415 + 2.6
983,546 + -0.3
983,695 - 0.6
983,707 - 0.1
983,717 - -0.4
984,006 - -0.1
984,154 + 0.1
984,577 - 2.0
984,578 - -0.5
984,608 + 2.3
984,624 + -1.6
985,013 - 15511 mRNA_7143 0.21 -0.1
985,097 + 15511 mRNA_7143 0.24 0.2
985,390 + 15511 mRNA_7143 0.33 1.7
985,494 - 15511 mRNA_7143 0.36 1.8
985,598 - 15511 mRNA_7143 0.39 0.5
985,598 + 15511 mRNA_7143 0.39 -0.1
985,706 + 15511 mRNA_7143 0.43 -2.5
985,841 + 15511 mRNA_7143 0.47 -0.1
985,994 - 15511 mRNA_7143 0.52 1.6
986,148 + 15511 mRNA_7143 0.57 0.1
986,154 + 15511 mRNA_7143 0.57 -0.8
986,156 - 15511 mRNA_7143 0.57 1.3
986,189 + 15511 mRNA_7143 0.58 0.7
986,565 + 15511 mRNA_7143 0.70 1.2
986,754 - 15511 mRNA_7143 0.76 1.4
986,845 - 15511 mRNA_7143 0.79 0.2
987,024 - 15511 mRNA_7143 0.84 -0.2
987,041 - 15511 mRNA_7143 0.85 -1.6
987,139 - 15511 mRNA_7143 0.88 0.3
987,321 - -1.4
987,332 - 0.3
987,370 - -0.3
987,791 - -0.4
987,800 + -1.0
987,922 + -0.0
988,061 - 0.2
988,070 + 0.0
988,083 - 0.6
988,194 - 0.7
988,202 + 0.4
988,211 - -1.7
988,219 + -0.3