Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7142

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7141: 15509 - BLAST AP-4 complex subunit epsilon [Leucoagaricus sp. SymC...., at 976528 to 979510 15509 mRNA_7142: 15510 - HMMPfam-Domain of unknown function DUF221-PF02714,HMMPfam-Late exocytosis, associated with Golgi transport-PF13967, at 979628 to 983826 15510 mRNA_7143: 15511 - HMMPfam-Protein of unknown function (DUF2421)-PF10334,HMMPfam-Fusaric acid resistance protein-like-PF13515,PRINTS-Brefeldin A-sensitivity protein 4 signature-PR02047,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 984352 to 987514 15511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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978,714 - 15509 mRNA_7141 0.73 -1.7
978,844 + 15509 mRNA_7141 0.78 -0.1
979,150 + 15509 mRNA_7141 0.88 -0.5
979,194 - 15509 mRNA_7141 0.89 0.2
979,556 - 1.0
979,793 + 0.1
979,983 - 0.2
980,035 + -0.4
980,101 + 15510 mRNA_7142 0.11 1.2
980,103 - 15510 mRNA_7142 0.11 0.5
980,283 - 15510 mRNA_7142 0.16 -1.1
980,512 + 15510 mRNA_7142 0.21 0.8
980,544 + 15510 mRNA_7142 0.22 -0.8
980,655 - 15510 mRNA_7142 0.24 0.4
980,714 - 15510 mRNA_7142 0.26 1.4
980,739 - 15510 mRNA_7142 0.26 0.1
980,793 + 15510 mRNA_7142 0.28 1.3
981,183 + 15510 mRNA_7142 0.37 0.3
981,330 + 15510 mRNA_7142 0.41 0.5
981,492 - 15510 mRNA_7142 0.44 1.5
981,516 + 15510 mRNA_7142 0.45 2.9
981,516 + 15510 mRNA_7142 0.45 0.6
981,765 + 15510 mRNA_7142 0.51 -0.2
981,830 + 15510 mRNA_7142 0.52 1.5
982,146 - 15510 mRNA_7142 0.60 0.4
982,536 + 15510 mRNA_7142 0.69 0.2
982,673 + 15510 mRNA_7142 0.73 0.9
982,706 + 15510 mRNA_7142 0.73 0.6
982,814 + 15510 mRNA_7142 0.76 -0.8
982,986 + 15510 mRNA_7142 0.80 1.5
983,265 - 15510 mRNA_7142 0.87 -2.6
983,415 + 2.6
983,546 + -0.3
983,695 - 0.6
983,707 - 0.1
983,717 - -0.4
984,006 - -0.1
984,154 + 0.1
984,577 - 2.0
984,578 - -0.5
984,608 + 2.3
984,624 + -1.6