Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7140

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7139: 15507 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 969483 to 971578 15507 mRNA_7140: 15508 - KOG1029 Endocytic adaptor protein intersectin, at 971914 to 976417 15508 mRNA_7141: 15509 - BLAST AP-4 complex subunit epsilon [Leucoagaricus sp. SymC...., at 976528 to 979510 15509

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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971,029 - 15507 mRNA_7139 0.74 1.5
971,125 - 15507 mRNA_7139 0.78 0.2
971,131 - 15507 mRNA_7139 0.79 0.6
971,269 + 15507 mRNA_7139 0.85 -0.1
971,288 - 15507 mRNA_7139 0.86 1.6
971,397 - 2.0
971,405 + 1.5
971,434 + 0.5
971,440 + 1.1
971,492 + 1.1
971,741 + 1.5
971,748 + 0.3
971,992 + 1.3
972,013 - 1.6
972,166 + 0.5
972,189 + 1.8
972,515 - 15508 mRNA_7140 0.13 1.1
972,596 - 15508 mRNA_7140 0.15 0.1
972,705 + 15508 mRNA_7140 0.18 1.2
972,742 + 15508 mRNA_7140 0.18 -0.2
972,890 - 15508 mRNA_7140 0.22 1.9
973,053 - 15508 mRNA_7140 0.25 0.9
973,436 + 15508 mRNA_7140 0.34 0.2
973,802 - 15508 mRNA_7140 0.42 0.2
973,805 + 15508 mRNA_7140 0.42 -0.8
973,937 + 15508 mRNA_7140 0.45 0.9
974,668 - 15508 mRNA_7140 0.61 0.2
974,721 - 15508 mRNA_7140 0.62 2.7
974,730 - 15508 mRNA_7140 0.63 0.9
974,778 - 15508 mRNA_7140 0.64 0.5
975,118 + 15508 mRNA_7140 0.71 0.9
975,194 - 15508 mRNA_7140 0.73 1.3
975,339 - 15508 mRNA_7140 0.76 0.4
975,755 + 15508 mRNA_7140 0.85 -2.0
976,065 - 0.6
976,209 - -0.2
976,314 - 0.2
976,380 + 2.7
976,501 - 0.0
976,519 + 0.7
976,519 + 0.4
976,635 - -0.1
976,636 - 0.5
976,824 + 1.2
976,933 - 15509 mRNA_7141 0.14 0.2
976,944 - 15509 mRNA_7141 0.14 -0.6
976,952 + 15509 mRNA_7141 0.14 1.2
976,953 + 15509 mRNA_7141 0.14 1.3
976,967 - 15509 mRNA_7141 0.15 1.8