Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7100

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7099: 15467 - K12845 SNU13, NHP2L U4/U6 small nuclear ribonucleoprotein SNU13, at 879733 to 880505 15467 mRNA_7100: 15468 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 880881 to 881621 15468 mRNA_7101: 15469 - K08968 E1.8.4.14 L-methionine (R)-S-oxide reductase, at 881719 to 882426 15469

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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880,836 - 0.9
880,847 + -0.1
880,996 + 15468 mRNA_7100 0.16 0.0
881,007 - 15468 mRNA_7100 0.17 0.6
881,149 - 15468 mRNA_7100 0.36 0.2
881,365 + 15468 mRNA_7100 0.65 -0.9
881,383 + 15468 mRNA_7100 0.68 -0.3
881,594 - -0.2
881,597 + 1.0
881,731 + 0.0
881,870 - 15469 mRNA_7101 0.21 0.1
881,876 - 15469 mRNA_7101 0.22 -0.1
881,882 - 15469 mRNA_7101 0.23 -0.5
881,896 + 15469 mRNA_7101 0.25 -0.6
882,017 + 15469 mRNA_7101 0.42 -1.1
882,027 - 15469 mRNA_7101 0.44 -0.9
882,053 - 15469 mRNA_7101 0.47 0.6
882,114 - 15469 mRNA_7101 0.56 1.0
882,177 - 15469 mRNA_7101 0.65 1.1
882,187 - 15469 mRNA_7101 0.66 1.7
882,189 + 15469 mRNA_7101 0.66 -0.1
882,191 + 15469 mRNA_7101 0.67 -0.4
882,192 - 15469 mRNA_7101 0.67 0.2
882,192 - 15469 mRNA_7101 0.67 -0.4
882,209 + 15469 mRNA_7101 0.69 2.7
882,213 - 15469 mRNA_7101 0.70 -0.0
882,219 + 15469 mRNA_7101 0.71 0.4
882,236 + 15469 mRNA_7101 0.73 0.1
882,380 - 0.3
882,464 - -0.1
882,465 + 0.3
882,472 - -0.6
882,475 - 1.3
882,477 - -1.2
882,485 - -0.1
882,486 - 0.7
882,585 + 2.5