Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6998

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6997: 15365 - K17053 ABP140 tRNAThr (cytosine32-N3)-methyltransferase, at 630254 to 632002 15365 mRNA_6998: 15366 - K00288 MTHFD methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase, at 632241 to 635924 15366 mRNA_6999: 15367 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140,SMART-Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)-SM00546,SUPERFAMILY--SSF46934, at 636264 to 637761 15367

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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631,313 - 15365 mRNA_6997 0.61 -0.1
631,347 - 15365 mRNA_6997 0.62 -1.7
631,478 - 15365 mRNA_6997 0.70 -1.7
631,606 + 15365 mRNA_6997 0.77 -0.4
631,628 + 15365 mRNA_6997 0.79 0.7
631,762 - 15365 mRNA_6997 0.86 1.4
631,897 + -0.3
632,045 + -0.0
632,046 - 0.7
632,046 - 0.6
632,057 + 0.2
632,058 + -0.1
632,060 + 0.3
632,073 - 1.5
632,076 + 0.4
632,215 + -0.2
632,218 - 0.7
632,230 - 1.6
632,238 + 0.6
632,365 + 1.7
632,372 + -1.1
632,378 + -0.3
632,381 - -1.4
632,389 + 0.4
633,564 + 15366 mRNA_6998 0.36 0.2
633,590 + 15366 mRNA_6998 0.37 0.1
633,859 - 15366 mRNA_6998 0.44 0.1
634,259 - 15366 mRNA_6998 0.55 -0.5
634,440 + 15366 mRNA_6998 0.60 -1.5
634,472 - 15366 mRNA_6998 0.61 0.1
634,760 - 15366 mRNA_6998 0.68 -3.2
635,188 + 15366 mRNA_6998 0.80 1.5
635,197 + 15366 mRNA_6998 0.80 -0.8
635,409 + 15366 mRNA_6998 0.86 0.9
635,607 - -0.8
636,042 - -0.3
636,058 + 0.0
636,066 + 2.1
636,162 - 0.5
636,191 + -0.0
636,301 - 1.2
636,403 + 1.3
636,505 - 15367 mRNA_6999 0.16 -0.8
636,511 - 15367 mRNA_6999 0.16 0.9
636,813 + 15367 mRNA_6999 0.37 0.6