Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6979

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584489 to 585687 15346 mRNA_6979: 15347 - KOG2789 Putative Zn-finger protein, at 586264 to 588274 15347 mRNA_6980: 15348 - SUPERFAMILY--SSF51445, at 588631 to 590610 15348

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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585,415 - 15346 mRNA_6978 0.77 -0.1
585,450 - 15346 mRNA_6978 0.80 1.1
585,726 - 0.7
585,861 - 0.2
585,874 - 0.2
585,880 + 0.1
585,888 - 0.8
585,890 + 0.6
585,913 + 3.1
585,916 + -0.3
585,917 + 0.5
585,932 + 0.6
586,034 + 0.9
586,054 - -0.4
586,054 + 0.4
586,066 + 1.2
586,188 - 2.3
586,198 + 0.8
586,199 - 0.8
586,204 - 0.9
586,213 + -0.7
586,218 - 0.9
586,224 - -0.3
586,228 + -1.3
586,230 - -0.2
586,353 - 2.3
586,355 - 2.4
586,361 - 0.6
586,364 + -0.6
586,377 + 1.6
586,378 + 1.0
586,382 + 0.2
586,655 + 15347 mRNA_6979 0.19 1.0
586,672 + 15347 mRNA_6979 0.20 0.0
586,800 + 15347 mRNA_6979 0.27 1.8
586,822 - 15347 mRNA_6979 0.28 1.0
586,945 + 15347 mRNA_6979 0.34 0.5
586,950 - 15347 mRNA_6979 0.34 0.8
587,112 - 15347 mRNA_6979 0.42 0.2
587,121 + 15347 mRNA_6979 0.43 0.4
587,208 + 15347 mRNA_6979 0.47 1.1
587,345 - 15347 mRNA_6979 0.54 0.7
587,397 - 15347 mRNA_6979 0.56 0.2
587,725 + 15347 mRNA_6979 0.73 0.9
587,815 + 15347 mRNA_6979 0.77 -0.4
587,979 + 15347 mRNA_6979 0.85 2.8
587,984 - 15347 mRNA_6979 0.86 1.1
588,227 - 1.0
588,266 - 0.4
588,272 + 0.2
588,392 - 1.0
588,569 + 0.3
588,581 - -0.1
588,585 + 0.4
588,586 - -0.6
588,694 - -0.7
588,730 - 0.1
588,752 - 0.1
589,042 + 15348 mRNA_6980 0.21 1.1
589,193 - 15348 mRNA_6980 0.28 -0.4
589,197 + 15348 mRNA_6980 0.29 -0.6
589,254 + 15348 mRNA_6980 0.31 -0.4