Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6976

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6976: 15344 - K14002 SCJ1 DnaJ-related protein SCJ1, at 582618 to 583763 15344 mRNA_6977: 15345 - K09515 DNAJB9 DnaJ homolog subfamily B member 9, at 583790 to 584346 15345 mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584489 to 585687 15346

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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581,656 + 0.2
581,675 - 1.5
581,705 - -0.6
581,709 - 0.2
581,720 + 3.0
581,725 + 0.9
581,728 + 1.0
581,730 - 0.3
581,732 + -0.7
581,734 - 0.5
581,734 - -0.3
581,743 + 0.9
581,751 + -1.0
581,755 - -0.3
581,780 - -0.1
581,789 - 1.7
581,795 - 1.6
581,797 - 3.0
581,797 - 0.5
581,800 + 2.5
581,812 + -0.1
581,828 - 0.2
581,846 - 0.7
581,870 - 2.7
581,905 + 0.5
581,969 + 0.1
581,982 - -0.7
581,984 - 0.6
581,987 - 0.8
581,990 - 1.3
581,992 + 1.1
581,993 - -0.3
581,997 - 1.3
582,000 - 1.1
582,004 + 0.3
582,019 - 2.2
582,027 + -0.6
582,035 - -1.1
582,049 - 1.4
582,055 - 3.6
582,056 - -0.5
582,062 + 0.1
582,069 + 1.3
582,071 + 1.0
582,071 - -0.4
582,111 - 0.9
582,125 - 0.8
582,152 - -0.1
582,161 + 0.0
582,164 - 0.2
582,173 - 0.9
582,177 + 0.2
582,181 + -0.7
582,185 + 0.2
582,187 - 2.8
582,199 - -1.2
582,319 + 1.8
582,324 + -0.1
582,350 - 0.2
582,354 - -0.6
582,354 - -1.6
582,375 - 0.2
582,435 - 0.4
582,441 + 0.3
582,468 - 0.6
582,492 - -0.9
582,492 + 0.2
582,596 - 1.0
582,690 - 0.2
582,932 + 15344 mRNA_6976 0.27 3.2
582,952 + 15344 mRNA_6976 0.29 1.0
583,366 + 15344 mRNA_6976 0.65 -0.2
583,375 + 15344 mRNA_6976 0.66 0.6
583,496 + 15344 mRNA_6976 0.77 1.3
584,005 + 15345 mRNA_6977 0.39 0.3
584,135 - 15345 mRNA_6977 0.62 0.5
584,245 + 15345 mRNA_6977 0.82 1.9
584,388 - 1.9
584,391 - 0.4
584,392 - 2.8
584,395 - 2.0
584,399 - -0.2
584,401 - 0.2
584,406 - -0.0
584,407 + 1.3
584,411 - 0.5
584,431 + 0.3
584,441 - 1.7
584,447 - 0.8
584,448 + 2.1
584,696 - 15346 mRNA_6978 0.17 -0.5
584,721 + 15346 mRNA_6978 0.19 -0.4
584,724 - 15346 mRNA_6978 0.20 1.1
584,756 - 15346 mRNA_6978 0.22 0.5