Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6967

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6966: 15334 - K02210 MCM7, CDC47 DNA replication licensing factor MCM7, at 555370 to 558100 15334 mRNA_6967: 15335 - K19995 SCAMP secretory carrier-associated membrane protein, at 558352 to 560106 15335 mRNA_6968: 15336 - K00737 MGAT3 beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, at 560422 to 561850 15336

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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558,137 - 0.9
558,509 + 1.0
559,097 - 15335 mRNA_6967 0.42 1.5
559,264 - 15335 mRNA_6967 0.52 -0.3
559,445 + 15335 mRNA_6967 0.62 1.5
559,715 + 15335 mRNA_6967 0.78 2.2
559,982 - 1.7
560,137 + -1.4
560,142 - 0.0
560,164 + 2.4
560,224 + -0.5
560,225 + 0.7
560,226 - -0.7
560,226 - 0.2
560,227 - 0.3
560,231 + -0.0
560,233 + -0.4
560,233 + 0.2
560,234 + 2.7
560,238 - 0.2
560,238 - 1.1
560,242 + 0.6
560,244 - 1.3
560,249 + -0.4
560,262 - 0.3
560,277 - 1.5
560,304 + 1.9
560,313 + -0.8
560,316 - 0.1
560,321 - -0.9
560,321 + 0.9
560,324 + 0.6
560,330 + -0.4
560,331 - -0.6
560,333 + -0.8
560,345 - -0.4
560,346 - 2.8
560,369 + 1.7
560,371 + -0.1
560,455 + 0.8
560,476 + 0.0
560,478 - -0.1
560,486 + 0.6
560,489 - 0.2
560,501 + -0.2
560,616 - 15336 mRNA_6968 0.14 -1.8
560,629 + 15336 mRNA_6968 0.14 0.4
560,758 - 15336 mRNA_6968 0.24 -1.1
561,034 + 15336 mRNA_6968 0.43 0.7
561,068 + 15336 mRNA_6968 0.45 1.3