Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6873

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6872: 15240 - KOG3035 Isoamyl acetate-hydrolyzing esterase, at 325677 to 326693 15240 mRNA_6873: 15241 - K01409 KAE1, tsaD, QRI7 N6-L-threonylcarbamoyladenine synthase, at 326924 to 328423 15241 mRNA_6874: 15242 - BLAST similar to An13g00570 [Aspergillus niger], at 328504 to 329604 15242

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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325,982 - 15240 mRNA_6872 0.30 0.5
326,032 - 15240 mRNA_6872 0.35 2.0
326,483 - 15240 mRNA_6872 0.79 0.8
326,610 + 0.4
326,765 + 0.3
327,035 - 0.2
327,186 + 15241 mRNA_6873 0.17 2.1
327,204 - 15241 mRNA_6873 0.19 1.9
327,630 - 15241 mRNA_6873 0.47 1.0
327,670 + 15241 mRNA_6873 0.50 1.4
327,673 - 15241 mRNA_6873 0.50 -0.1
327,766 - 15241 mRNA_6873 0.56 0.6
327,827 + 15241 mRNA_6873 0.60 0.2
328,344 - -0.4
328,494 - -0.2
328,500 - -0.2
328,631 - 15242 mRNA_6874 0.12 2.2
328,633 + 15242 mRNA_6874 0.12 -0.3
328,638 + 15242 mRNA_6874 0.12 0.2
328,640 + 15242 mRNA_6874 0.12 0.2
328,658 + 15242 mRNA_6874 0.14 1.8
328,802 - 15242 mRNA_6874 0.27 -2.0
328,919 + 15242 mRNA_6874 0.38 -1.7
329,097 + 15242 mRNA_6874 0.54 -1.6
329,233 + 15242 mRNA_6874 0.66 -1.2
329,254 + 15242 mRNA_6874 0.68 -0.5
329,394 + 15242 mRNA_6874 0.81 -0.1
329,398 - 15242 mRNA_6874 0.81 -0.6