Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6850

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6849: 15217 - K14686 SLC31A1, CTR1 solute carrier family 31 (copper transporter), member 1, at 269969 to 271865 15217 mRNA_6850: 15218 - K05605 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, at 272004 to 274065 15218 mRNA_6851: 15219 - Hypothetical Protein, at 274275 to 275000 15219

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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271,214 - 15217 mRNA_6849 0.66 0.0
271,229 + 15217 mRNA_6849 0.66 -0.6
271,247 - 15217 mRNA_6849 0.67 2.4
271,255 + 15217 mRNA_6849 0.68 0.2
271,268 + 15217 mRNA_6849 0.68 1.2
271,292 - 15217 mRNA_6849 0.70 0.5
271,304 - 15217 mRNA_6849 0.70 0.2
271,305 + 15217 mRNA_6849 0.70 0.0
271,305 + 15217 mRNA_6849 0.70 -1.2
271,314 - 15217 mRNA_6849 0.71 0.6
271,330 - 15217 mRNA_6849 0.72 -1.1
271,343 + 15217 mRNA_6849 0.72 0.5
271,351 + 15217 mRNA_6849 0.73 0.0
271,351 - 15217 mRNA_6849 0.73 -0.2
271,352 + 15217 mRNA_6849 0.73 -0.1
271,353 - 15217 mRNA_6849 0.73 0.1
271,357 - 15217 mRNA_6849 0.73 0.4
271,365 + 15217 mRNA_6849 0.74 -2.4
271,369 - 15217 mRNA_6849 0.74 0.3
271,370 - 15217 mRNA_6849 0.74 0.1
271,370 - 15217 mRNA_6849 0.74 -0.0
271,372 + 15217 mRNA_6849 0.74 -0.8
271,374 - 15217 mRNA_6849 0.74 0.0
271,377 - 15217 mRNA_6849 0.74 1.3
271,379 - 15217 mRNA_6849 0.74 -0.9
271,386 + 15217 mRNA_6849 0.75 -0.2
271,386 + 15217 mRNA_6849 0.75 -0.1
271,389 + 15217 mRNA_6849 0.75 0.3
271,391 + 15217 mRNA_6849 0.75 0.4
271,396 - 15217 mRNA_6849 0.75 -0.3
271,405 - 15217 mRNA_6849 0.76 1.4
271,416 + 15217 mRNA_6849 0.76 -0.9
271,429 - 15217 mRNA_6849 0.77 0.4
271,440 - 15217 mRNA_6849 0.78 0.3
271,445 + 15217 mRNA_6849 0.78 -1.4
271,453 - 15217 mRNA_6849 0.78 -0.3
271,454 + 15217 mRNA_6849 0.78 -0.1
271,461 + 15217 mRNA_6849 0.79 2.0
271,461 + 15217 mRNA_6849 0.79 0.3
271,470 + 15217 mRNA_6849 0.79 -0.3
271,473 + 15217 mRNA_6849 0.79 0.1
271,480 - 15217 mRNA_6849 0.80 0.5
271,482 - 15217 mRNA_6849 0.80 0.2
271,494 + 15217 mRNA_6849 0.80 1.1
271,497 + 15217 mRNA_6849 0.81 -0.1
271,518 - 15217 mRNA_6849 0.82 -0.3
271,529 + 15217 mRNA_6849 0.82 2.4
271,535 - 15217 mRNA_6849 0.83 -0.3
271,544 + 15217 mRNA_6849 0.83 -0.9
271,629 - 15217 mRNA_6849 0.88 1.8
271,656 + 15217 mRNA_6849 0.89 0.8
271,677 + 0.4
271,706 + 0.7
271,785 - 1.4
271,795 - 0.1
271,812 + 1.7
271,822 + 0.1
271,822 + -0.6
271,824 - 0.7
271,830 + 0.8
271,861 - 0.7
271,932 - -1.1
271,936 - 1.2
271,940 + 1.8
271,943 + -1.4
271,947 + 0.1
271,950 - -0.3
271,954 - 0.4
271,955 - 1.8
271,956 + 2.2
271,957 - -0.0
271,958 + -0.2
271,964 + -0.0
271,970 + 0.5
271,972 + 1.0
271,982 + -1.0
272,087 - -0.1
272,103 - 0.1
272,112 + 1.4
272,120 + 1.9
272,123 + 1.0
272,148 - -0.6
272,242 - 15218 mRNA_6850 0.12 1.2
272,243 + 15218 mRNA_6850 0.12 2.1
272,251 - 15218 mRNA_6850 0.12 0.5
272,386 - 15218 mRNA_6850 0.19 0.0
272,388 - 15218 mRNA_6850 0.19 0.2
272,398 + 15218 mRNA_6850 0.19 -0.7
272,403 - 15218 mRNA_6850 0.19 1.3
272,409 + 15218 mRNA_6850 0.20 0.4
272,687 - 15218 mRNA_6850 0.33 -1.8
272,702 + 15218 mRNA_6850 0.34 1.4
272,745 + 15218 mRNA_6850 0.36 0.5
272,749 - 15218 mRNA_6850 0.36 0.1
272,826 - 15218 mRNA_6850 0.40 0.7
273,181 + 15218 mRNA_6850 0.57 1.5
273,291 - 15218 mRNA_6850 0.62 -1.1
273,308 + 15218 mRNA_6850 0.63 1.2
273,895 + -0.9
274,289 + -1.4
274,298 + -0.9
274,314 - -0.6
274,405 - 15219 mRNA_6851 0.18 1.5
274,585 - 15219 mRNA_6851 0.43 0.8
274,747 - 15219 mRNA_6851 0.65 0.1
274,893 - 15219 mRNA_6851 0.85 -0.2