Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6807

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6806: 15174 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 176839 to 177908 15174 mRNA_6807: 15175 - HMMPfam-GRIP domain-PF01465,ProSiteProfiles-GRIP domain profile.-PS50913,SMART-golgin-97, RanBP2alpha,Imh1p and p230/golgin-245-SM00755, at 178332 to 182273 15175 mRNA_6808: 15176 - K12856 PRPF8, PRP8 pre-mRNA-processing factor 8, at 182860 to 191504 15176

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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177,781 + 15174 mRNA_6806 0.88 -2.4
177,957 + 0.0
178,128 - -0.8
178,149 + -0.6
178,588 - 0.4
178,699 - 1.3
178,861 + 15175 mRNA_6807 0.13 0.0
179,262 + 15175 mRNA_6807 0.24 0.5
179,705 - 15175 mRNA_6807 0.35 0.1
179,876 + 15175 mRNA_6807 0.39 0.9
180,166 + 15175 mRNA_6807 0.47 -1.5
180,784 - 15175 mRNA_6807 0.62 0.7
180,859 + 15175 mRNA_6807 0.64 0.7
181,082 + 15175 mRNA_6807 0.70 0.3
181,145 + 15175 mRNA_6807 0.71 1.9
181,478 + 15175 mRNA_6807 0.80 -1.1
182,204 - 1.6
182,215 - -0.9
182,362 + -0.7
182,362 + -0.1
182,365 - 1.3
182,383 - 0.2
182,404 - 0.5
182,501 - 1.0
182,515 - 0.3
182,522 - -0.9
182,526 + 0.9
182,526 - 0.3
182,527 + -0.1
182,532 + -0.6
182,542 + 0.3
182,548 + 2.4
182,548 + 1.1
182,548 + 0.8
182,550 + 1.7
182,678 - -0.2
182,680 - -0.5
182,682 - 3.1
182,818 - 0.9
182,838 - 0.0