Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6800

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6799: 15167 - K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase, at 163328 to 165722 15167 mRNA_6800: 15168 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 165891 to 167581 15168 mRNA_6801: 15169 - K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1, at 168460 to 170274 15169

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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165,778 + 1.4
165,791 - -0.8
165,791 - 0.4
165,812 - 2.6
165,824 - 1.1
165,825 - -0.6
165,825 - -1.9
165,828 + 0.7
165,910 - 0.7
166,306 + 15168 mRNA_6800 0.25 0.3
166,574 - 15168 mRNA_6800 0.40 0.2
166,583 + 15168 mRNA_6800 0.41 0.0
166,857 - 15168 mRNA_6800 0.57 0.7
167,003 - 15168 mRNA_6800 0.66 0.5
167,045 - 15168 mRNA_6800 0.68 -0.1
167,050 + 15168 mRNA_6800 0.69 0.8
167,231 + 15168 mRNA_6800 0.79 0.8
167,304 - 15168 mRNA_6800 0.84 -0.6
167,305 + 15168 mRNA_6800 0.84 -0.0
167,315 + 15168 mRNA_6800 0.84 0.1
167,339 + 15168 mRNA_6800 0.86 0.2
167,478 + 1.2
167,606 + 0.5
167,611 + -0.3
167,614 - 0.9
167,626 - 0.8
167,731 - 0.3
167,757 - -0.0
167,763 - -0.0
167,772 + -0.2
167,795 - -0.3
167,890 + -0.8
167,891 + -0.8
167,899 - 0.3
167,900 - -0.5
167,902 + 2.3
167,946 - 0.4
167,953 - -0.7
167,960 - 0.0
167,964 - 1.8
168,029 + -0.4
168,079 - -0.0
168,080 + -0.0
168,085 - 0.7
168,086 + 0.7
168,089 - 0.3
168,089 - -0.1
168,089 - -1.0
168,090 - 0.1
168,090 - 0.0
168,090 + 2.4
168,090 - 0.4
168,091 + -1.1
168,093 + -1.0
168,097 + 0.4
168,107 + 0.4
168,116 + -1.0
168,117 - -0.4
168,117 + 0.8
168,118 - 0.3
168,123 - 1.7
168,138 + 0.5
168,141 - -0.6
168,148 + 0.5
168,149 + -0.5
168,171 + 0.9
168,174 + 2.0
168,177 - 1.5
168,181 - -0.0
168,190 - 0.0
168,190 + -1.2
168,200 - 0.3
168,203 - -0.0
168,205 - 2.1
168,212 + 0.1
168,220 - -0.0
168,224 + -0.1
168,226 - -0.6
168,228 - -0.9
168,229 - -0.1
168,229 + 0.1
168,244 + -0.2
168,244 + -0.8
168,245 - 1.3
168,247 + -0.1
168,247 + 0.0
168,249 + -0.6
168,250 - 0.3
168,279 - -0.2
168,344 - 0.3
168,360 - -0.3
168,383 + 0.8
168,385 - 2.4
168,386 - 0.9
168,505 - 1.3
168,532 - -1.8
168,542 - 0.6