Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6795

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6794: 15162 - K10773 NTH endonuclease III, at 148472 to 150085 15162 mRNA_6795: 15163 - KOG3548 DNA damage checkpoint protein RHP9/CRB2/53BP1, at 150190 to 154769 15163 mRNA_6796: 15164 - Hypothetical Protein, at 155550 to 156068 15164

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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149,257 - 15162 mRNA_6794 0.49 0.8
149,551 - 15162 mRNA_6794 0.67 -2.1
149,796 - 15162 mRNA_6794 0.82 1.5
149,852 + 15162 mRNA_6794 0.86 1.6
150,009 - 0.2
150,133 + 0.2
150,138 + -1.8
150,151 - -0.5
150,282 - 1.2
150,296 + 0.3
150,417 + 0.9
150,469 - 1.4
150,608 + 1.5
150,864 - 15163 mRNA_6795 0.15 -0.2
150,895 - 15163 mRNA_6795 0.15 0.9
151,027 - 15163 mRNA_6795 0.18 -2.4
151,051 - 15163 mRNA_6795 0.19 -1.5
151,357 + 15163 mRNA_6795 0.25 1.4
151,492 + 15163 mRNA_6795 0.28 0.5
152,216 - 15163 mRNA_6795 0.44 -0.3
152,346 - 15163 mRNA_6795 0.47 0.1
152,355 + 15163 mRNA_6795 0.47 1.4
152,456 + 15163 mRNA_6795 0.49 -0.6
152,660 - 15163 mRNA_6795 0.54 0.0
153,245 - 15163 mRNA_6795 0.67 -0.7
153,281 + 15163 mRNA_6795 0.67 0.0
153,396 + 15163 mRNA_6795 0.70 1.2
153,694 - 15163 mRNA_6795 0.77 3.8
153,842 - 15163 mRNA_6795 0.80 1.2
154,010 - 15163 mRNA_6795 0.83 -1.0
154,156 + 15163 mRNA_6795 0.87 0.4
154,270 - 15163 mRNA_6795 0.89 0.7
154,288 - 15163 mRNA_6795 0.89 0.6
154,320 + 0.1
154,586 + -0.3
154,713 - 0.9
154,732 + 0.5
154,914 + -0.7
155,147 + 0.0
155,166 + -1.2
155,186 + -0.2
155,298 + 0.2
155,324 - 1.1
155,337 + -0.6
155,446 + 0.8
155,462 - 0.5
155,481 + 1.4
155,498 + 0.4
155,626 - 15164 mRNA_6796 0.15 -1.2
155,632 - 15164 mRNA_6796 0.16 0.1
155,646 - 15164 mRNA_6796 0.18 -1.8
155,651 + 15164 mRNA_6796 0.19 0.0
155,708 - 15164 mRNA_6796 0.30 1.3
155,754 - 15164 mRNA_6796 0.39 1.9