Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6794

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6793: 15161 - KOG2375 Protein interacting with poly(A)-binding protein, at 144793 to 148155 15161 mRNA_6794: 15162 - K10773 NTH endonuclease III, at 148472 to 150085 15162 mRNA_6795: 15163 - KOG3548 DNA damage checkpoint protein RHP9/CRB2/53BP1, at 150190 to 154769 15163

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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147,518 - 15161 mRNA_6793 0.81 -2.6
147,817 + 15161 mRNA_6793 0.90 -1.7
148,254 - 1.1
148,270 + 1.2
148,370 - -0.2
148,401 - 0.4
148,421 - 0.4
148,545 - -0.9
148,546 + 2.5
148,698 - 15162 mRNA_6794 0.14 1.1
148,700 - 15162 mRNA_6794 0.14 -1.1
149,032 + 15162 mRNA_6794 0.35 3.3
149,257 - 15162 mRNA_6794 0.49 0.8
149,551 - 15162 mRNA_6794 0.67 -2.1
149,796 - 15162 mRNA_6794 0.82 1.5
149,852 + 15162 mRNA_6794 0.86 1.6
150,009 - 0.2
150,133 + 0.2
150,138 + -1.8
150,151 - -0.5
150,282 - 1.2
150,296 + 0.3
150,417 + 0.9
150,469 - 1.4
150,608 + 1.5
150,864 - 15163 mRNA_6795 0.15 -0.2
150,895 - 15163 mRNA_6795 0.15 0.9
151,027 - 15163 mRNA_6795 0.18 -2.4
151,051 - 15163 mRNA_6795 0.19 -1.5