Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6793

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6792: 15160 - K14396 PABPN1, PABP2 polyadenylate-binding protein 2, at 143720 to 144685 15160 mRNA_6793: 15161 - KOG2375 Protein interacting with poly(A)-binding protein, at 144793 to 148155 15161 mRNA_6794: 15162 - K10773 NTH endonuclease III, at 148472 to 150085 15162

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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143,850 - 15160 mRNA_6792 0.13 -0.2
143,906 + 15160 mRNA_6792 0.19 -0.1
144,023 + 15160 mRNA_6792 0.31 0.7
144,186 + 15160 mRNA_6792 0.48 0.3
144,602 - -1.0
144,614 + 0.1
144,638 + -0.5
144,742 + -0.7
144,752 + 0.1
144,755 - -0.3
144,760 + -1.9
144,762 - 0.9
144,765 + 0.5
144,775 - -0.4
144,778 + 0.5
144,783 - 0.7
144,923 + -1.7
144,924 - -0.2
144,937 + -1.2
144,939 - -0.6
145,016 + -0.6
145,190 + 15161 mRNA_6793 0.12 -2.1
145,219 + 15161 mRNA_6793 0.13 -3.5
145,247 + 15161 mRNA_6793 0.13 -0.4
145,282 + 15161 mRNA_6793 0.15 -0.1
145,362 - 15161 mRNA_6793 0.17 -0.6
145,363 + 15161 mRNA_6793 0.17 -3.8
145,758 + 15161 mRNA_6793 0.29 -1.0
145,798 + 15161 mRNA_6793 0.30 -5.1
145,800 + 15161 mRNA_6793 0.30 -1.2
146,099 + 15161 mRNA_6793 0.39 -3.2
146,116 + 15161 mRNA_6793 0.39 -3.7
146,264 + 15161 mRNA_6793 0.44 -3.4
146,391 - 15161 mRNA_6793 0.48 -3.0
146,494 - 15161 mRNA_6793 0.51 -3.3
146,514 + 15161 mRNA_6793 0.51 -3.1
146,793 - 15161 mRNA_6793 0.59 -1.8
146,799 + 15161 mRNA_6793 0.60 -1.6
146,927 - 15161 mRNA_6793 0.63 -2.5
147,086 - 15161 mRNA_6793 0.68 0.0
147,518 - 15161 mRNA_6793 0.81 -2.6
147,817 + 15161 mRNA_6793 0.90 -1.7
148,254 - 1.1
148,270 + 1.2
148,370 - -0.2
148,401 - 0.4
148,421 - 0.4
148,545 - -0.9
148,546 + 2.5
148,698 - 15162 mRNA_6794 0.14 1.1
148,700 - 15162 mRNA_6794 0.14 -1.1
149,032 + 15162 mRNA_6794 0.35 3.3