Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6792

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6791: 15159 - K00888 PI4KA phosphatidylinositol 4-kinase A, at 136109 to 143352 15159 mRNA_6792: 15160 - K14396 PABPN1, PABP2 polyadenylate-binding protein 2, at 143720 to 144685 15160 mRNA_6793: 15161 - KOG2375 Protein interacting with poly(A)-binding protein, at 144793 to 148155 15161

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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143,407 + -0.6
143,850 - 15160 mRNA_6792 0.13 -0.2
143,906 + 15160 mRNA_6792 0.19 -0.1
144,023 + 15160 mRNA_6792 0.31 0.7
144,186 + 15160 mRNA_6792 0.48 0.3
144,602 - -1.0
144,614 + 0.1
144,638 + -0.5
144,742 + -0.7
144,752 + 0.1
144,755 - -0.3
144,760 + -1.9
144,762 - 0.9
144,765 + 0.5
144,775 - -0.4
144,778 + 0.5
144,783 - 0.7
144,923 + -1.7
144,924 - -0.2
144,937 + -1.2
144,939 - -0.6
145,016 + -0.6
145,190 + 15161 mRNA_6793 0.12 -2.1
145,219 + 15161 mRNA_6793 0.13 -3.5
145,247 + 15161 mRNA_6793 0.13 -0.4
145,282 + 15161 mRNA_6793 0.15 -0.1
145,362 - 15161 mRNA_6793 0.17 -0.6
145,363 + 15161 mRNA_6793 0.17 -3.8