Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6606

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6605: 14973 - KOG2177 Predicted E3 ubiquitin ligase, at 1213438 to 1216130 14973 mRNA_6606: 14974 - KOG2761 START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer, at 1216222 to 1217950 14974 mRNA_6607: 14975 - K14572 MDN1, REA1 midasin, at 1218299 to 1235391 14975

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,215,592 + 14973 mRNA_6605 0.80 -2.0
1,216,168 + 1.0
1,216,783 + 14974 mRNA_6606 0.32 -0.3
1,216,794 + 14974 mRNA_6606 0.33 1.8
1,216,805 - 14974 mRNA_6606 0.34 -0.6
1,216,825 - 14974 mRNA_6606 0.35 -1.8
1,216,880 - 14974 mRNA_6606 0.38 1.1
1,217,099 - 14974 mRNA_6606 0.51 -0.6
1,217,190 - 14974 mRNA_6606 0.56 0.1
1,217,223 + 14974 mRNA_6606 0.58 -0.2
1,217,815 - -0.8
1,217,821 + 1.4
1,217,822 - 2.1
1,217,833 - 1.3
1,217,833 - 0.1
1,217,957 + 0.2
1,217,966 + 0.8
1,217,983 + 2.5
1,218,127 + 0.9
1,218,150 + -0.5