Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6441

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6440: 14808 - Hypothetical Protein, at 802192 to 802893 14808 mRNA_6441: 14809 - K07200 PRKAG 5'-AMP-activated protein kinase, regulatory gamma subunit, at 803025 to 805267 14809 mRNA_6442: 14810 - Hypothetical Protein, at 805308 to 806483 14810

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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802,135 + -2.5
802,282 + 14808 mRNA_6440 0.13 0.8
802,556 - 14808 mRNA_6440 0.52 0.5
802,594 - 14808 mRNA_6440 0.57 -0.5
802,655 - 14808 mRNA_6440 0.66 -0.2
802,696 + 14808 mRNA_6440 0.72 0.9
802,729 - 14808 mRNA_6440 0.76 1.1
802,773 + 14808 mRNA_6440 0.83 0.2
802,844 - 0.0
802,908 + 1.3
803,674 - 14809 mRNA_6441 0.29 -1.4
803,750 - 14809 mRNA_6441 0.32 1.7
804,305 + 14809 mRNA_6441 0.57 -1.9
804,328 - 14809 mRNA_6441 0.58 -0.3
804,424 + 14809 mRNA_6441 0.62 -0.3
804,711 + 14809 mRNA_6441 0.75 -0.2
804,715 + 14809 mRNA_6441 0.75 -0.4
805,114 - -1.4
805,131 + 2.0
805,151 - -1.9
805,182 + -1.3
805,306 + 0.2
805,315 + 1.8
805,328 + -0.2
805,353 + 0.7
805,447 - 14810 mRNA_6442 0.12 -1.1
805,465 + 14810 mRNA_6442 0.13 0.5
805,469 + 14810 mRNA_6442 0.14 1.4
805,488 - 14810 mRNA_6442 0.15 -1.6
805,491 + 14810 mRNA_6442 0.16 -0.7
805,503 + 14810 mRNA_6442 0.17 0.2
805,619 + 14810 mRNA_6442 0.26 1.1
805,745 - 14810 mRNA_6442 0.37 0.9
805,757 - 14810 mRNA_6442 0.38 -0.0
805,766 + 14810 mRNA_6442 0.39 0.9
805,771 + 14810 mRNA_6442 0.39 -0.4
805,960 + 14810 mRNA_6442 0.55 0.0
805,990 + 14810 mRNA_6442 0.58 0.3
806,061 + 14810 mRNA_6442 0.64 0.1
806,130 - 14810 mRNA_6442 0.70 0.8