Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6433

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6432: 14800 - K18203 LCMT1 [phosphatase 2A protein]-leucine-carboxy methyltransferase, at 788062 to 789443 14800 mRNA_6433: 14801 - K12180 COPS7, CSN7 COP9 signalosome complex subunit 7, at 789986 to 791469 14801 mRNA_6434: 14802 - K01904 4CL 4-coumarate--CoA ligase, at 791667 to 793929 14802

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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789,030 + 14800 mRNA_6432 0.70 0.1
789,338 - 0.2
789,352 + -0.3
789,481 - 1.2
789,483 - 1.2
789,528 + 0.9
789,596 - 0.8
789,761 + 0.7
789,766 - 0.8
789,766 - 0.2
789,766 - 0.6
789,769 + 0.2
789,773 + 0.8
789,774 - -1.3
789,786 + 0.9
789,786 + 0.1
789,897 - 0.8
789,914 - 1.3
789,915 + 1.7
789,935 + -0.1
789,942 + 1.8
789,943 + -0.1
789,954 + 1.7
790,050 - 1.0
790,087 + 1.2
790,246 + 14801 mRNA_6433 0.18 0.8
790,856 + 14801 mRNA_6433 0.59 -1.7
791,104 - 14801 mRNA_6433 0.75 -0.8
791,109 + 14801 mRNA_6433 0.76 -1.9
791,113 - 14801 mRNA_6433 0.76 -0.2
791,399 + 0.1
791,425 + 0.8
791,592 + 0.2
791,603 - 0.4
791,610 - 2.1
791,611 + -0.7
791,617 + -0.0
791,627 + 0.1
791,630 - 1.9
791,757 + 0.5
791,759 - -0.1
791,883 + 0.0
791,901 + 14802 mRNA_6434 0.10 -0.1
792,046 - 14802 mRNA_6434 0.17 1.2
792,152 + 14802 mRNA_6434 0.21 0.2
792,186 - 14802 mRNA_6434 0.23 -0.1
792,334 + 14802 mRNA_6434 0.29 0.2
792,355 - 14802 mRNA_6434 0.30 0.8
792,362 + 14802 mRNA_6434 0.31 -0.8