Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6393

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6392: 14760 - KOG4533 Uncharacterized conserved protein, at 704609 to 706220 14760 mRNA_6393: 14761 - KOG3823 Uncharacterized conserved protein, at 706440 to 709966 14761 mRNA_6394: 14762 - HMMPfam-Asparagine synthase-PF00733,SUPERFAMILY--SSF52402,SUPERFAMILY--SSF56235, at 710467 to 712891 14762

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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705,728 + 14760 mRNA_6392 0.69 -0.0
705,887 + 14760 mRNA_6392 0.79 0.2
705,901 - 14760 mRNA_6392 0.80 0.3
705,904 + 14760 mRNA_6392 0.80 0.7
705,908 - 14760 mRNA_6392 0.81 0.8
705,950 + 14760 mRNA_6392 0.83 1.6
706,022 + 14760 mRNA_6392 0.88 1.1
706,073 - 0.6
706,116 + -0.8
706,224 + 2.2
706,348 - 0.5
706,349 - 0.1
706,354 - -0.8
706,366 + 1.1
706,375 - 0.2
706,380 - 1.5
706,381 + 0.7
706,381 + 0.2
706,383 + -0.4
706,392 + -0.8
706,417 - -0.1
706,434 + -0.7
706,676 + 0.3
706,683 + 1.1
706,961 + 14761 mRNA_6393 0.15 1.5
706,963 - 14761 mRNA_6393 0.15 -0.5
706,965 + 14761 mRNA_6393 0.15 1.4
707,098 + 14761 mRNA_6393 0.19 -0.2
707,394 - 14761 mRNA_6393 0.27 -0.0
707,398 + 14761 mRNA_6393 0.27 0.1
707,483 + 14761 mRNA_6393 0.30 -0.7
707,549 - 14761 mRNA_6393 0.31 -0.6
707,847 - 14761 mRNA_6393 0.40 0.6
708,018 - 14761 mRNA_6393 0.45 -0.4
708,136 - 14761 mRNA_6393 0.48 1.5
708,308 + 14761 mRNA_6393 0.53 -0.9
708,405 + 14761 mRNA_6393 0.56 -0.1
708,405 + 14761 mRNA_6393 0.56 0.4
708,479 + 14761 mRNA_6393 0.58 1.7
708,602 + 14761 mRNA_6393 0.61 0.2
708,680 - 14761 mRNA_6393 0.64 1.2
708,704 + 14761 mRNA_6393 0.64 0.4
709,159 - 14761 mRNA_6393 0.77 -1.2
709,167 + 14761 mRNA_6393 0.77 1.4
709,491 - 14761 mRNA_6393 0.87 1.4
709,496 + 14761 mRNA_6393 0.87 0.2
709,776 + -0.3
709,800 - 0.7
710,025 - 1.0
710,148 - 0.5
710,178 - 0.6
710,178 + 0.4
710,189 - 0.7
710,201 + 0.0
710,231 - 1.2
710,373 + -0.0
710,504 - -1.5
710,608 - 1.4
710,633 + 0.1
710,635 + 1.8
710,640 - 2.3
710,738 + 14762 mRNA_6394 0.11 0.7
710,800 - 14762 mRNA_6394 0.14 1.3
710,854 + 14762 mRNA_6394 0.16 0.9
710,921 - 14762 mRNA_6394 0.19 -0.6
710,922 + 14762 mRNA_6394 0.19 1.4
710,933 + 14762 mRNA_6394 0.19 0.7
710,934 - 14762 mRNA_6394 0.19 0.1