Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6389

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6388: 14756 - HMMPfam-BRCA1 C Terminus (BRCT) domain-PF00533,ProSiteProfiles-BRCT domain profile.-PS50172,SUPERFAMILY--SSF52113, at 693931 to 695622 14756 mRNA_6389: 14757 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 695999 to 699737 14757 mRNA_6390: 14758 - KOG0605 NDR and related serine/threonine kinases, at 700093 to 702768 14758

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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695,746 - -0.5
695,808 - -1.0
695,910 + 0.2
695,918 - -1.3
696,012 - 0.2
696,369 - 0.4
696,685 + 14757 mRNA_6389 0.18 1.1
696,769 + 14757 mRNA_6389 0.21 1.1
696,798 - 14757 mRNA_6389 0.21 0.6
696,823 + 14757 mRNA_6389 0.22 1.8
696,838 + 14757 mRNA_6389 0.22 0.3
697,052 - 14757 mRNA_6389 0.28 -0.5
697,065 - 14757 mRNA_6389 0.29 1.0
697,100 + 14757 mRNA_6389 0.29 -0.3
697,503 + 14757 mRNA_6389 0.40 0.7
698,132 + 14757 mRNA_6389 0.57 1.8
698,304 + 14757 mRNA_6389 0.62 0.6
698,324 - 14757 mRNA_6389 0.62 0.7
698,395 + 14757 mRNA_6389 0.64 1.8
698,737 + 14757 mRNA_6389 0.73 1.4
698,847 - 14757 mRNA_6389 0.76 -0.4
699,083 + 14757 mRNA_6389 0.82 0.7
699,198 - 14757 mRNA_6389 0.86 0.3
699,451 + 1.6
699,506 + 0.8
699,517 + -0.1
699,523 - 0.6
699,604 + -1.1
699,619 - -0.8
699,620 + -0.6
700,055 - -0.0
700,203 + -0.6
700,263 + -0.9
700,481 + 14758 mRNA_6390 0.14 -0.5
700,506 - 14758 mRNA_6390 0.15 -1.2
700,653 - 14758 mRNA_6390 0.21 -1.8