Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6376

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6375: 14743 - K01178 E3.2.1.3 glucoamylase, at 666615 to 668807 14743 mRNA_6376: 14744 - K14811 DBP3 ATP-dependent RNA helicase DBP3, at 669168 to 671272 14744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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668,192 + 14743 mRNA_6375 0.72 1.4
668,198 - 14743 mRNA_6375 0.72 2.3
668,634 - 0.5
668,752 + -0.1
668,789 - -0.1
668,869 - -0.1
668,918 + -0.3
668,922 - 1.5
668,930 + 0.4
668,936 - -1.4
668,965 + -1.3
668,967 + -0.1
668,998 - 1.2
669,108 + 0.4
669,110 - -0.2
669,111 - 0.3
669,111 - 1.0
669,116 + 0.8
669,119 - -0.1
669,120 + 1.1
669,124 - -0.1
669,125 - -4.9
669,126 - -0.0
669,133 - 0.7
669,134 + -0.2
669,137 + -0.6
669,146 - 1.3
669,274 + 2.1
669,287 + 1.5
669,295 - 0.5
669,302 - 0.6
669,391 + 14744 mRNA_6376 0.11 0.5
669,564 - 14744 mRNA_6376 0.19 0.9
669,710 - 14744 mRNA_6376 0.26 0.5
669,899 - 14744 mRNA_6376 0.35 -0.3
670,036 - 14744 mRNA_6376 0.41 1.2
670,166 - 14744 mRNA_6376 0.47 0.7
670,188 + 14744 mRNA_6376 0.48 0.5
670,199 + 14744 mRNA_6376 0.49 1.9
670,608 + 14744 mRNA_6376 0.68 -0.5
670,750 + 14744 mRNA_6376 0.75 1.2
670,750 - 14744 mRNA_6376 0.75 0.1
670,906 - 14744 mRNA_6376 0.83 -0.2
671,302 - 1.5
671,378 + 0.3
671,428 - 0.5
671,517 - 0.2
671,526 - -0.3
671,762 - -0.4
671,857 - 0.1
672,064 + 0.3
672,092 - -0.0
672,130 + -0.2