Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6375

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6374: 14742 - K20464 OSBPL5_8, ORP5_8 oxysterol-binding protein-related protein 5/8, at 663767 to 666324 14742 mRNA_6375: 14743 - K01178 E3.2.1.3 glucoamylase, at 666615 to 668807 14743 mRNA_6376: 14744 - K14811 DBP3 ATP-dependent RNA helicase DBP3, at 669168 to 671272 14744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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665,763 + 14742 mRNA_6374 0.78 1.4
665,891 - 14742 mRNA_6374 0.83 0.3
665,899 - 14742 mRNA_6374 0.83 1.3
665,900 - 14742 mRNA_6374 0.83 0.1
665,910 + 14742 mRNA_6374 0.84 -2.0
665,929 - 14742 mRNA_6374 0.85 0.8
665,939 + 14742 mRNA_6374 0.85 1.0
666,026 - 14742 mRNA_6374 0.88 0.7
666,042 + 14742 mRNA_6374 0.89 -0.0
666,042 + 14742 mRNA_6374 0.89 -0.5
666,045 - 14742 mRNA_6374 0.89 -0.5
666,057 - 14742 mRNA_6374 0.90 0.1
666,068 + 14742 mRNA_6374 0.90 0.4
666,069 + 2.0
666,070 - 1.5
666,070 - 1.3
666,072 + 2.3
666,075 + 0.0
666,174 + 0.5
666,203 - 0.2
666,204 + -0.1
666,205 + 0.3
666,208 - -0.3
666,211 - -0.8
666,215 - 1.6
666,220 + 1.0
666,243 - -0.2
666,341 - 0.9
666,349 - -1.6
666,356 + 1.4
666,392 + 0.7
666,666 - 0.3
666,979 + 14743 mRNA_6375 0.17 -0.5
667,258 - 14743 mRNA_6375 0.29 1.1
667,264 - 14743 mRNA_6375 0.30 -0.5
667,608 + 14743 mRNA_6375 0.45 0.3
667,758 + 14743 mRNA_6375 0.52 0.4
667,909 - 14743 mRNA_6375 0.59 2.1
668,192 + 14743 mRNA_6375 0.72 1.4
668,198 - 14743 mRNA_6375 0.72 2.3
668,634 - 0.5
668,752 + -0.1
668,789 - -0.1
668,869 - -0.1
668,918 + -0.3
668,922 - 1.5
668,930 + 0.4
668,936 - -1.4
668,965 + -1.3
668,967 + -0.1
668,998 - 1.2
669,108 + 0.4
669,110 - -0.2
669,111 - 0.3
669,111 - 1.0
669,116 + 0.8
669,119 - -0.1
669,120 + 1.1
669,124 - -0.1
669,125 - -4.9
669,126 - -0.0
669,133 - 0.7
669,134 + -0.2
669,137 + -0.6
669,146 - 1.3
669,274 + 2.1
669,287 + 1.5
669,295 - 0.5
669,302 - 0.6
669,391 + 14744 mRNA_6376 0.11 0.5
669,564 - 14744 mRNA_6376 0.19 0.9
669,710 - 14744 mRNA_6376 0.26 0.5