Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6319

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6318: 14686 - Hypothetical Protein, at 535354 to 538435 14686 mRNA_6319: 14687 - KOG1729 FYVE finger containing protein, at 538943 to 540662 14687 mRNA_6320: 14688 - Hypothetical Protein, at 540621 to 541463 14688

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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538,199 - 2.1
538,377 + 0.5
538,450 + 0.9
538,485 - 0.7
538,769 + -0.8
538,772 + 0.3
538,915 - 0.2
539,219 + 14687 mRNA_6319 0.16 -0.3
539,331 + 14687 mRNA_6319 0.23 0.5
539,576 - 14687 mRNA_6319 0.37 -0.4
539,643 + 14687 mRNA_6319 0.41 0.0
539,766 - 14687 mRNA_6319 0.48 0.3
539,887 + 14687 mRNA_6319 0.55 0.4
540,034 - 14687 mRNA_6319 0.63 -0.3
540,050 + 14687 mRNA_6319 0.64 -2.3
540,161 + 14687 mRNA_6319 0.71 1.9
540,185 - 14687 mRNA_6319 0.72 -0.1
540,193 + 14687 mRNA_6319 0.73 1.0
540,202 - 14687 mRNA_6319 0.73 -1.3
540,209 - 14687 mRNA_6319 0.74 0.6
540,210 - 14687 mRNA_6319 0.74 1.3
540,350 - 14687 mRNA_6319 0.82 0.6
540,372 - 14687 mRNA_6319 0.83 -2.1
540,372 + 14687 mRNA_6319 0.83 -0.0
540,376 - 14687 mRNA_6319 0.83 0.3
540,385 + 14687 mRNA_6319 0.84 -1.1
540,385 + 14687 mRNA_6319 0.84 0.2
540,385 + 14687 mRNA_6319 0.84 1.1
540,386 + 14687 mRNA_6319 0.84 0.5
540,390 + 14687 mRNA_6319 0.84 0.2
540,391 + 14687 mRNA_6319 0.84 0.2
540,392 + 14687 mRNA_6319 0.84 -0.2
540,398 + 14687 mRNA_6319 0.85 2.4
540,402 - 14687 mRNA_6319 0.85 -0.3
540,498 - -1.0
540,499 + 0.1
540,517 - -1.5
540,541 - 0.2
540,553 + 2.1
540,554 - -0.5
540,577 + 0.3
540,637 + 1.9
540,651 + 0.0
540,651 + 2.8
540,667 - 0.6
540,677 - -0.3
540,695 + 0.8
540,773 - 14688 mRNA_6320 0.18 0.4
540,792 - 14688 mRNA_6320 0.20 2.3
540,792 + 14688 mRNA_6320 0.20 -0.1
540,795 - 14688 mRNA_6320 0.21 0.7
540,801 - 14688 mRNA_6320 0.21 0.6
540,805 - 14688 mRNA_6320 0.22 0.6
540,805 - 14688 mRNA_6320 0.22 -0.5
540,807 - 14688 mRNA_6320 0.22 -0.8
540,812 - 14688 mRNA_6320 0.23 2.1
540,815 + 14688 mRNA_6320 0.23 0.8
540,816 - 14688 mRNA_6320 0.23 -0.3
540,817 + 14688 mRNA_6320 0.23 0.4
540,820 + 14688 mRNA_6320 0.24 2.2
540,822 - 14688 mRNA_6320 0.24 0.3
540,823 - 14688 mRNA_6320 0.24 0.5
540,823 + 14688 mRNA_6320 0.24 0.7
540,823 - 14688 mRNA_6320 0.24 0.2
540,824 - 14688 mRNA_6320 0.24 1.2
540,826 - 14688 mRNA_6320 0.24 0.7
540,829 - 14688 mRNA_6320 0.25 0.6
540,829 + 14688 mRNA_6320 0.25 1.4
540,830 - 14688 mRNA_6320 0.25 0.7
540,833 - 14688 mRNA_6320 0.25 0.5
540,835 + 14688 mRNA_6320 0.25 0.6
540,836 + 14688 mRNA_6320 0.26 0.9
540,837 + 14688 mRNA_6320 0.26 1.4
540,838 + 14688 mRNA_6320 0.26 1.0
540,839 + 14688 mRNA_6320 0.26 0.0
540,840 + 14688 mRNA_6320 0.26 0.1
540,840 + 14688 mRNA_6320 0.26 0.2
540,844 + 14688 mRNA_6320 0.26 0.1
540,845 - 14688 mRNA_6320 0.27 -0.6
540,850 - 14688 mRNA_6320 0.27 2.1
540,851 + 14688 mRNA_6320 0.27 0.3
540,852 + 14688 mRNA_6320 0.27 0.1
540,900 + 14688 mRNA_6320 0.33 0.0
540,903 - 14688 mRNA_6320 0.33 2.7
540,908 - 14688 mRNA_6320 0.34 -2.8
541,009 - 14688 mRNA_6320 0.46 -0.4
541,010 - 14688 mRNA_6320 0.46 0.5
541,015 + 14688 mRNA_6320 0.47 1.0
541,025 - 14688 mRNA_6320 0.48 -1.0
541,029 - 14688 mRNA_6320 0.48 -0.7
541,034 - 14688 mRNA_6320 0.49 -0.3
541,040 + 14688 mRNA_6320 0.50 -0.6
541,055 - 14688 mRNA_6320 0.51 -0.1
541,056 - 14688 mRNA_6320 0.52 -0.3
541,059 - 14688 mRNA_6320 0.52 -0.8
541,066 - 14688 mRNA_6320 0.53 0.1
541,067 + 14688 mRNA_6320 0.53 -0.0
541,073 + 14688 mRNA_6320 0.54 0.4
541,108 - 14688 mRNA_6320 0.58 1.0
541,111 + 14688 mRNA_6320 0.58 -0.5
541,124 - 14688 mRNA_6320 0.60 0.9
541,131 + 14688 mRNA_6320 0.60 0.3
541,134 - 14688 mRNA_6320 0.61 0.4
541,149 + 14688 mRNA_6320 0.63 0.3
541,149 - 14688 mRNA_6320 0.63 0.9
541,155 + 14688 mRNA_6320 0.63 0.1
541,159 + 14688 mRNA_6320 0.64 -2.6
541,165 - 14688 mRNA_6320 0.65 0.2
541,171 - 14688 mRNA_6320 0.65 0.1
541,182 + 14688 mRNA_6320 0.67 1.5
541,182 - 14688 mRNA_6320 0.67 0.2
541,184 + 14688 mRNA_6320 0.67 -0.2
541,226 + 14688 mRNA_6320 0.72 -1.5
541,234 - 14688 mRNA_6320 0.73 -0.3
541,235 - 14688 mRNA_6320 0.73 -0.7
541,237 + 14688 mRNA_6320 0.73 2.2
541,248 + 14688 mRNA_6320 0.74 0.6
541,250 + 14688 mRNA_6320 0.75 -0.2
541,252 - 14688 mRNA_6320 0.75 0.1
541,253 + 14688 mRNA_6320 0.75 1.7
541,264 - 14688 mRNA_6320 0.76 2.3
541,293 - 14688 mRNA_6320 0.80 0.5
541,295 - 14688 mRNA_6320 0.80 1.0
541,330 + 14688 mRNA_6320 0.84 -0.6
541,332 - 14688 mRNA_6320 0.84 2.1
541,334 - 14688 mRNA_6320 0.85 0.3
541,343 - 14688 mRNA_6320 0.86 -0.6
541,348 - 14688 mRNA_6320 0.86 -0.7
541,360 - 14688 mRNA_6320 0.88 1.5
541,371 - 14688 mRNA_6320 0.89 -0.4
541,373 + 14688 mRNA_6320 0.89 0.5
541,380 + -0.7
541,380 + -0.4
541,397 - -0.1
541,405 + -0.1
541,411 - 0.3
541,464 + 1.0
541,476 - -0.3
541,483 + 0.4
541,501 + 0.5
541,510 + 1.4
541,517 - 1.0
541,520 + 2.1
541,525 + 0.7
541,529 - -0.8