Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6308

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494501 to 498811 14675 mRNA_6308: 14676 - K09326 OTX1 homeobox protein OTX1, at 499751 to 502382 14676 mRNA_6309: 14677 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 502808 to 503552 14677

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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498,878 + 2.0
498,889 - 0.2
498,894 + -1.2
499,024 - 2.0
499,026 - -0.0
499,027 + -0.5
499,031 - 3.6
499,039 + -0.3
499,048 - 0.9
499,050 + 1.7
499,059 + -0.1
499,065 - 0.6
499,100 + 1.0
499,127 + -0.1
499,127 + -0.3
499,129 + 0.6
499,129 - 0.2
499,136 - 0.4
499,139 - 0.2
499,140 + 1.0
499,147 + -1.5
499,152 - 1.2
499,153 - -0.2
499,170 - -0.5
499,174 - -1.0
499,176 - 0.5
499,178 + -0.1
499,179 - 0.1
499,179 + -0.3
499,182 + 1.5
499,183 + -1.6
499,191 - 1.9
499,205 + 1.6
499,220 + -0.9
499,314 - 1.1
499,321 - 0.1
499,323 - 1.3
499,333 - 1.5
499,335 + 0.4
499,338 + 0.4
499,341 - 1.3
499,341 - -0.2
499,342 - 0.4
499,351 + 2.4
499,372 + 0.4
499,482 - -0.3
499,482 - -2.0
499,485 - 1.6
499,486 + 0.0
499,487 - -1.3
499,569 - 0.1
499,625 - 0.8
499,651 - 0.2
499,775 - -0.4
499,933 - 1.2
500,077 + 14676 mRNA_6308 0.12 0.0
500,078 - 14676 mRNA_6308 0.12 -0.0
500,085 + 14676 mRNA_6308 0.13 0.2
500,092 + 14676 mRNA_6308 0.13 0.5
501,512 - 14676 mRNA_6308 0.67 2.0
502,400 + 0.3
502,428 + 0.7
502,507 - 0.1
502,515 + -0.5
502,523 - 0.3
502,526 - 0.0
502,527 - 1.6
502,538 + -0.7
502,540 + -0.6
502,669 + 0.1
502,682 + 0.6
502,690 - 1.4
502,712 + 0.8
502,983 + 14677 mRNA_6309 0.23 -0.2
502,987 - 14677 mRNA_6309 0.24 -0.8
503,007 + 14677 mRNA_6309 0.27 -0.6
503,220 - 14677 mRNA_6309 0.55 -1.0
503,281 - 14677 mRNA_6309 0.63 0.0