Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6281

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6280: 14648 - K14050 RABGGTA geranylgeranyl transferase type-2 subunit alpha, at 431030 to 432502 14648 mRNA_6281: 14649 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 432804 to 433205 14649 mRNA_6282: 14650 - HMMPfam-SET domain-PF00856,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-SET domain profile.-PS50280,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SMART-SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain-SM00317,SUPERFAMILY--SSF48452,SUPERFAMILY--SSF82199, at 433495 to 438419 14650

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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432,700 - 0.6
432,715 + -0.5
432,878 - 14649 mRNA_6281 0.18 0.2
432,896 + 14649 mRNA_6281 0.23 -0.1
433,280 + 1.6
433,300 - 0.0
433,326 + 1.5
433,577 - 2.3
433,813 + -0.1
433,878 - 2.2
434,023 - 14650 mRNA_6282 0.11 1.2