Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6270

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6269: 14637 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 405556 to 407019 14637 mRNA_6270: 14638 - KOG2645 Type I phosphodiesterase/nucleotide pyrophosphatase, at 407745 to 410533 14638 mRNA_6271: 14639 - Hypothetical Protein, at 410534 to 411923 14639

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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406,775 + 14637 mRNA_6269 0.83 0.4
407,079 - 0.9
407,092 - 0.9
407,096 + 0.3
407,201 - 2.8
407,216 - 1.3
407,230 + 1.3
407,234 - -0.2
407,491 - -1.9
407,503 - 0.1
407,524 - 0.8
407,527 - 1.6
407,535 - -0.5
407,544 - 0.5
407,548 - 0.3
407,552 + 1.0
407,670 - 1.2
407,673 - 1.9
407,680 + 1.5
407,847 - 1.6
407,985 - 0.6
407,994 + 0.1
408,006 + -0.3
408,266 - 14638 mRNA_6270 0.19 -1.2
408,321 + 14638 mRNA_6270 0.21 1.2
408,416 + 14638 mRNA_6270 0.24 1.5
408,716 + 14638 mRNA_6270 0.35 2.1
408,721 - 14638 mRNA_6270 0.35 0.2
409,016 + 14638 mRNA_6270 0.46 -0.4
409,124 - 14638 mRNA_6270 0.49 -0.2
409,139 - 14638 mRNA_6270 0.50 -1.7
409,271 - 14638 mRNA_6270 0.55 2.5
409,434 - 14638 mRNA_6270 0.61 0.6
409,955 - 14638 mRNA_6270 0.79 0.1
410,165 - 14638 mRNA_6270 0.87 -0.4
410,174 + 14638 mRNA_6270 0.87 -2.9
410,301 - 1.0
410,447 - 1.9
410,471 + 0.3
410,476 - 1.2
410,572 + 2.1
410,592 - 0.1
410,599 + 0.4
410,601 + 0.2
410,606 + -1.0
410,607 + -0.7
410,617 - -0.2
410,765 - 14639 mRNA_6271 0.17 -0.4
410,770 - 14639 mRNA_6271 0.17 0.7
410,781 + 14639 mRNA_6271 0.18 0.1
410,781 - 14639 mRNA_6271 0.18 -0.2
410,789 + 14639 mRNA_6271 0.18 0.6
410,792 + 14639 mRNA_6271 0.19 -0.7
410,792 - 14639 mRNA_6271 0.19 -0.8
410,797 - 14639 mRNA_6271 0.19 -1.1
410,816 + 14639 mRNA_6271 0.20 0.8
410,925 - 14639 mRNA_6271 0.28 0.1
410,928 + 14639 mRNA_6271 0.28 3.4
411,080 + 14639 mRNA_6271 0.39 2.2
411,095 - 14639 mRNA_6271 0.40 1.3
411,106 + 14639 mRNA_6271 0.41 3.6
411,190 + 14639 mRNA_6271 0.47 2.2
411,233 - 14639 mRNA_6271 0.50 0.7
411,253 - 14639 mRNA_6271 0.52 1.0
411,254 + 14639 mRNA_6271 0.52 0.3
411,398 - 14639 mRNA_6271 0.62 0.1
411,522 - 14639 mRNA_6271 0.71 -2.0
411,527 - 14639 mRNA_6271 0.71 1.5