Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6260

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374998 to 377098 14627 mRNA_6260: 14628 - HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631, at 377562 to 381779 14628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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377,019 - -0.1
377,463 - -0.7
377,929 - -0.3
378,598 - 14628 mRNA_6260 0.25 1.6
378,739 - 14628 mRNA_6260 0.28 -0.2
378,758 - 14628 mRNA_6260 0.28 -0.0
378,900 + 14628 mRNA_6260 0.32 -0.2
379,070 + 14628 mRNA_6260 0.36 0.9
379,649 - 14628 mRNA_6260 0.49 -0.6
379,743 - 14628 mRNA_6260 0.52 -1.6
379,748 + 14628 mRNA_6260 0.52 1.5
380,066 - 14628 mRNA_6260 0.59 -0.1
380,082 - 14628 mRNA_6260 0.60 -1.0
380,660 + 14628 mRNA_6260 0.73 1.8
380,821 - 14628 mRNA_6260 0.77 -1.6
380,943 - 14628 mRNA_6260 0.80 1.8
380,964 - 14628 mRNA_6260 0.81 0.0
381,410 - -0.7
381,534 - -1.4
381,559 + -0.8
381,687 - -0.0
381,740 - -0.0
381,847 + 1.4
381,855 - 0.8
381,867 + -0.2
381,867 + 0.0
381,874 + 0.6
381,882 - -1.8
381,896 + -0.5
381,899 + 1.1
381,936 - 0.1
381,941 + 0.3
381,941 + -0.7
381,942 - 2.7
381,943 - -0.9
381,943 - 1.1
381,946 + 0.5
381,946 + 0.2
381,948 + -0.2
381,948 - -0.0
381,964 - -0.1
381,979 - 1.0
381,981 + -0.9
381,993 + 1.7
382,008 - -0.6
382,089 + -0.2
382,089 + -0.3
382,104 + 1.0
382,110 - 0.6
382,132 + 0.4
382,143 - 0.0
382,189 - -1.0
382,195 - 0.7
382,212 + -0.1
382,220 + 1.3
382,238 - 0.0
382,240 - 1.5
382,249 + -0.6
382,254 - 1.0
382,264 - 1.2
382,289 - 0.3
382,293 - 1.6
382,307 + -0.1
382,324 + -0.5
382,332 + 1.8
382,340 + 0.8
382,345 + 2.0
382,349 - 0.5
382,360 + 0.9
382,363 + -0.8
382,365 + 0.4
382,369 + -0.2
382,370 - 0.7
382,370 - 0.7
382,375 + 0.7
382,381 + -0.5
382,418 - 0.4
382,423 + -0.4
382,433 + -0.3
382,434 - -1.0
382,436 + 0.8
382,436 - -0.4
382,436 - -0.8
382,437 - -0.3
382,448 - -1.0
382,449 + -0.7
382,451 + 0.5
382,471 - -3.9
382,503 + 0.6
382,516 + 1.1
382,529 - 0.7
382,531 + -1.0
382,531 + 0.2
382,535 + 0.9
382,542 + -0.1
382,543 - 0.4
382,546 - -0.2
382,549 - 0.6
382,550 - 1.1
382,556 + 0.5
382,566 - 1.7
382,570 - -1.1
382,571 - -0.1
382,573 - 0.2
382,575 - 0.5
382,583 - -0.2
382,583 - 1.1
382,586 + 0.0
382,586 + 1.0
382,587 + 0.8
382,588 - -2.4
382,588 - -0.1
382,590 - 0.5
382,592 - -0.1
382,594 + 0.7
382,603 + 0.2
382,652 - -0.5
382,663 - 0.5
382,691 - -0.7
382,695 + 2.4
382,700 + 0.0
382,707 - 0.8
382,713 - 0.5
382,724 + -0.6
382,726 + -0.0
382,732 + 1.1