Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6256

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6255: 14623 - K01452 E3.5.1.41 chitin deacetylase, at 365616 to 367386 14623 mRNA_6256: 14624 - Hypothetical Protein, at 367934 to 368444 14624 mRNA_6257: 14625 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 368702 to 371060 14625

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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367,278 + -0.1
367,299 - 0.5
367,567 - -0.1
367,573 + 0.4
367,579 - -1.2
367,709 + -1.9
367,723 - -0.6
367,727 - -0.3
367,730 - 1.3
367,741 - 0.8
367,742 - -0.8
367,864 + 1.8
367,879 - 0.9
367,893 + 1.1
367,910 + -0.5
368,071 + 14624 mRNA_6256 0.27 0.5
368,201 - 14624 mRNA_6256 0.52 0.6
368,287 - 14624 mRNA_6256 0.69 -0.3
368,329 - 14624 mRNA_6256 0.77 0.1
368,360 + 14624 mRNA_6256 0.83 0.6
368,505 - 0.1
368,510 + 2.2
368,608 - -0.9
368,655 + 0.5
368,951 - 14625 mRNA_6257 0.11 0.6
369,082 + 14625 mRNA_6257 0.16 1.8
369,241 + 14625 mRNA_6257 0.23 2.7