Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6190

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6189: 14557 - ProSiteProfiles-Tyrosine specific protein phosphatases family profile.-PS50056,SUPERFAMILY--SSF52799, at 212357 to 214481 14557 mRNA_6190: 14558 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 215040 to 217246 14558 mRNA_6191: 14559 - K01485 codA cytosine deaminase, at 218019 to 218832 14559

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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214,103 + 14557 mRNA_6189 0.82 0.8
214,568 + -0.3
214,607 + 0.8
214,702 - -0.7
214,719 + -0.4
214,726 - 0.4
214,733 + 0.3
214,889 - 2.0
214,906 - 0.7
215,201 + 0.4
215,596 + 14558 mRNA_6190 0.25 -0.3
215,619 + 14558 mRNA_6190 0.26 1.0
215,755 - 14558 mRNA_6190 0.32 0.6
215,816 + 14558 mRNA_6190 0.35 1.3
216,017 + 14558 mRNA_6190 0.44 -1.2
216,042 + 14558 mRNA_6190 0.45 0.1
216,190 - 14558 mRNA_6190 0.52 0.6
216,331 - 14558 mRNA_6190 0.58 0.2
216,335 - 14558 mRNA_6190 0.59 -0.1
216,752 - 14558 mRNA_6190 0.78 0.4
216,782 + 14558 mRNA_6190 0.79 -1.0
216,937 + 14558 mRNA_6190 0.86 0.9
217,049 - 0.1
217,056 + -0.1
217,057 + 0.3
217,058 - 0.7
217,065 - -0.6
217,071 + 0.7
217,209 + 0.8
217,210 + 0.5
217,220 + -0.5
217,236 - -0.4
217,345 - -2.4
217,351 - -0.7
217,352 + -0.3
217,352 - 0.4
217,363 - -0.1
217,363 - 0.2
217,365 - 0.0
217,366 + -0.1
217,367 - 1.1
217,369 - 0.5
217,370 + -0.1
217,372 - -0.4
217,372 + 0.6
217,372 - 0.3
217,383 + 1.5
217,385 + 0.6
217,390 - 0.6
217,391 + 0.9
217,392 + -0.4
217,392 + 1.2
217,396 - 0.5
217,398 - 1.2
217,408 + 1.0
217,429 - 2.3
217,441 + 1.6
217,460 - 0.7
217,465 + -0.2
217,488 + 0.5
217,549 - -0.4
217,572 + 0.7
217,575 - 0.5
217,594 - -0.1
217,605 + -0.6
217,620 + 0.1
217,623 - -1.6
217,625 - 0.6
217,626 + 0.3
217,628 - 1.0
217,630 - 0.5
217,631 + -0.0
217,633 + 0.5
217,634 + 2.0
217,638 - 2.5
217,639 - -0.0
217,646 - -1.0
217,653 + 2.8
217,655 + -0.6
217,662 - -0.0
217,677 - 0.5
217,694 - 1.1
217,695 + -1.7
217,696 + -1.2
217,706 + 1.5
217,707 + 0.8
217,721 + -0.3
217,739 + 1.7
217,750 + 0.6
217,772 + 0.2
217,777 + 2.4
217,778 + 0.7
217,787 + 0.3
217,801 + 1.8
217,801 + 0.2
217,808 + -0.9
217,818 + -0.8
217,822 - -0.9
217,823 + -0.2
217,823 - 0.1
217,824 + 0.9
217,825 - 0.1
217,825 - -0.3
217,825 + 1.1
217,832 + 1.4
217,833 + 0.5
217,835 + -0.3
217,837 + -1.9
217,841 + 1.2
217,842 + -0.6
217,848 - 1.1
217,851 + 1.2
217,855 - 0.6
217,859 + 0.2
217,874 + 0.2
217,985 + 0.6
217,995 + -0.7
218,006 + -0.2
218,011 - 0.5
218,152 + 14559 mRNA_6191 0.16 0.7
218,164 + 14559 mRNA_6191 0.18 -0.7