Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6179

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6178: 14546 - K17623 HDHD1 pseudouridine 5'-phosphatase, at 185787 to 186902 14546 mRNA_6179: 14547 - KOG2101 Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s), at 187281 to 188756 14547 mRNA_6180: 14548 - KOG0218 Mismatch repair MSH3, at 188869 to 192529 14548

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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186,386 + 14546 mRNA_6178 0.54 -0.7
186,519 + 14546 mRNA_6178 0.66 1.8
186,668 + 14546 mRNA_6178 0.79 -0.2
186,780 - 14546 mRNA_6178 0.89 0.3
186,982 - 0.4
186,997 - -0.1
187,217 + 0.4
187,250 - -1.4
187,254 - 0.7
187,265 - -0.3
187,268 + 1.3
187,320 + -1.0
187,714 - 14547 mRNA_6179 0.29 2.8
187,853 + 14547 mRNA_6179 0.39 0.8
188,291 + 14547 mRNA_6179 0.68 -0.6
188,455 + 14547 mRNA_6179 0.80 0.8
189,007 + 1.7
189,126 + 1.0
189,406 - 14548 mRNA_6180 0.15 -0.1
189,478 - 14548 mRNA_6180 0.17 -0.1
189,585 + 14548 mRNA_6180 0.20 -0.1