Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6177

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6176: 14544 - K03000 RPA12, ZNRD1 DNA-directed RNA polymerase I subunit RPA12, at 182326 to 182954 14544 mRNA_6177: 14545 - K00868 pdxK, pdxY pyridoxine kinase, at 183334 to 184793 14545 mRNA_6178: 14546 - K17623 HDHD1 pseudouridine 5'-phosphatase, at 185787 to 186902 14546

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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182,958 - 1.4
182,973 + 2.4
183,109 - -0.6
183,124 - -0.5
183,126 + 2.0
183,255 - 0.3
183,258 - 0.4
183,267 + 0.8
183,269 - -0.3
183,270 - -0.1
183,280 - 1.1
183,397 - 0.6
183,410 + 0.4
183,421 - 1.2
183,551 - 14545 mRNA_6177 0.15 -0.3
183,560 + 14545 mRNA_6177 0.15 -0.4
183,572 - 14545 mRNA_6177 0.16 0.6
183,572 - 14545 mRNA_6177 0.16 -0.4
183,588 + 14545 mRNA_6177 0.17 -0.0
183,734 - 14545 mRNA_6177 0.27 -0.8
183,877 + 14545 mRNA_6177 0.37 0.6
184,020 + 14545 mRNA_6177 0.47 0.0
184,034 - 14545 mRNA_6177 0.48 0.2
184,035 + 14545 mRNA_6177 0.48 0.9
184,062 - 14545 mRNA_6177 0.50 0.0
184,338 - 14545 mRNA_6177 0.69 0.0
184,464 + 14545 mRNA_6177 0.77 1.1
184,627 + 14545 mRNA_6177 0.89 0.0
184,734 + -0.2
184,743 - 0.0
185,147 - 0.3
185,196 + 0.3
185,324 - -0.0
185,640 + -0.3