Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6143

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6142: 14510 - Hypothetical Protein, at 107739 to 108173 14510 mRNA_6143: 14511 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 108337 to 111111 14511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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107,346 - 1.7
107,359 - 0.3
107,363 + 1.8
107,371 - 0.4
107,372 - -0.0
107,375 - 1.6
107,376 + -0.9
107,390 + 2.2
107,395 + 1.0
107,488 - 0.9
107,507 + -0.5
107,523 - -0.4
107,535 - 0.3
107,535 - -0.8
107,536 + 2.9
107,542 + 1.6
107,559 + 0.1
107,574 - 0.1
107,674 - -0.5
107,691 - 1.5
107,819 - 14510 mRNA_6142 0.18 2.4
107,981 + 14510 mRNA_6142 0.56 0.5
108,234 - -0.1
108,409 - 0.8
108,537 - -1.0
109,006 + 14511 mRNA_6143 0.24 0.1
109,083 + 14511 mRNA_6143 0.27 0.8
109,333 + 14511 mRNA_6143 0.36 1.1
109,604 - 14511 mRNA_6143 0.46 0.1
109,880 - 14511 mRNA_6143 0.56 -0.7
110,022 - 14511 mRNA_6143 0.61 -0.3
110,155 + 14511 mRNA_6143 0.66 -1.4
110,738 + 14511 mRNA_6143 0.87 1.6
111,117 - 0.9
111,722 - -1.6
111,730 + -0.3
111,863 - 0.3
111,863 - -0.6
111,870 - 0.8
111,872 - 0.0
111,883 - 0.5
111,890 + -0.9
111,923 + 0.1
111,932 - -0.2
111,981 + 0.2
111,983 - 1.6
111,983 - -1.9
111,984 - 1.6
111,991 - -0.7
111,992 + 1.0
111,992 + 0.5
112,006 - -0.6
112,006 + -0.6
112,009 + -1.7
112,011 + -0.6
112,011 + 0.4
112,015 + 0.2
112,016 - -0.3
112,020 + 1.5