Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6106

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6106: 14474 - K08332 VAC8 vacuolar protein 8, at 223 to 3658 14474 mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3990 to 10005 14475

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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39 + 1.9
39 + 2.6
40 + 0.9
40 + 1.0
40 + 1.3
41 + 0.3
56 + 1.2
56 + 1.2
56 + 0.1
58 + 0.9
59 + 0.8
59 + -0.2
62 - 0.3
65 - -0.2
77 + 1.1
84 + -1.4
102 + 1.3
137 + 2.2
151 + -0.8
200 + 0.4
208 + 1.6
216 + 1.6
229 + 1.6
348 - 0.5
430 + -0.4
498 - 0.1
502 - 1.6
685 + 14474 mRNA_6106 0.13 0.9
747 + 14474 mRNA_6106 0.15 -0.3
755 + 14474 mRNA_6106 0.15 1.4
946 + 14474 mRNA_6106 0.21 -3.2
975 + 14474 mRNA_6106 0.22 0.6
1,245 + 14474 mRNA_6106 0.30 -0.5
2,125 + 14474 mRNA_6106 0.55 -0.2
2,839 - 14474 mRNA_6106 0.76 -0.9
3,125 - 14474 mRNA_6106 0.84 -1.5
3,248 - 14474 mRNA_6106 0.88 0.0
3,570 + 0.8
3,665 + 0.8
3,692 + 0.2
3,706 + 1.1
3,726 + -2.3
3,820 + 1.6
3,853 + 0.4
3,859 + 0.6
3,909 - 0.1
3,929 - 0.0