Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6027

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6026: 14394 - HMMPfam-Zeta toxin-PF06414,SUPERFAMILY--SSF52540, at 1476488 to 1478196 14394 mRNA_6027: 14395 - HMMPfam-Cysteine-rich secretory protein family-PF00188,PRINTS-Allergen V5/Tpx-1 family signature-PR00837,SMART-SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.-SM00198,SUPERFAMILY--SSF55797, at 1478977 to 1480198 14395 mRNA_6028: 14396 - KOG2521 Uncharacterized conserved protein, at 1480225 to 1481311 14396

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,478,051 - 0.8
1,478,159 + 0.1
1,478,310 - 2.1
1,478,320 + 2.1
1,478,330 + 0.2
1,478,701 + 0.5
1,478,774 + 0.2
1,478,789 + 0.1
1,478,809 - 0.4
1,478,888 + -0.5
1,479,816 + 14395 mRNA_6027 0.69 0.3
1,479,893 - 14395 mRNA_6027 0.75 1.6
1,480,075 - 14395 mRNA_6027 0.90 2.5
1,480,122 + 0.2
1,480,240 + -0.9
1,480,241 - 1.4
1,480,242 + -0.2
1,480,268 - 1.7
1,480,388 + 14396 mRNA_6028 0.15 -1.4
1,480,391 - 14396 mRNA_6028 0.15 0.3
1,480,419 + 14396 mRNA_6028 0.18 0.2
1,480,520 + 14396 mRNA_6028 0.27 0.8
1,480,547 + 14396 mRNA_6028 0.30 2.2
1,480,637 - 14396 mRNA_6028 0.38 -0.1
1,480,683 + 14396 mRNA_6028 0.42 -0.3
1,480,686 - 14396 mRNA_6028 0.42 -1.3
1,480,692 + 14396 mRNA_6028 0.43 2.5
1,480,701 + 14396 mRNA_6028 0.44 1.6
1,480,811 - 14396 mRNA_6028 0.54 1.9
1,480,813 - 14396 mRNA_6028 0.54 0.7
1,480,859 - 14396 mRNA_6028 0.58 0.1
1,480,863 + 14396 mRNA_6028 0.59 -1.3
1,480,866 - 14396 mRNA_6028 0.59 -0.1
1,480,887 + 14396 mRNA_6028 0.61 0.2
1,480,931 - 14396 mRNA_6028 0.65 0.2
1,480,971 - 14396 mRNA_6028 0.69 0.5
1,480,972 - 14396 mRNA_6028 0.69 0.5
1,480,979 + 14396 mRNA_6028 0.69 -0.4
1,480,979 + 14396 mRNA_6028 0.69 0.3
1,480,979 + 14396 mRNA_6028 0.69 -1.4
1,480,982 - 14396 mRNA_6028 0.70 1.1
1,480,982 - 14396 mRNA_6028 0.70 0.3
1,480,982 - 14396 mRNA_6028 0.70 -1.6
1,480,982 - 14396 mRNA_6028 0.70 1.0
1,481,012 - 14396 mRNA_6028 0.72 -2.3
1,481,020 + 14396 mRNA_6028 0.73 0.7
1,481,020 + 14396 mRNA_6028 0.73 0.4
1,481,076 - 14396 mRNA_6028 0.78 0.3
1,481,120 - 14396 mRNA_6028 0.82 0.9