Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5998

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5997: 14365 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1412411 to 1414490 14365 mRNA_5998: 14366 - Hypothetical Protein, at 1414983 to 1417635 14366 mRNA_5999: 14367 - KOG1064 RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily, at 1417778 to 1422818 14367

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,414,205 - 14365 mRNA_5997 0.86 0.7
1,414,219 - 14365 mRNA_5997 0.87 0.5
1,414,278 + 14365 mRNA_5997 0.90 0.3
1,414,519 - 0.2
1,414,803 - -0.6
1,414,854 + -0.1
1,414,862 - -0.0
1,414,969 - 1.0
1,415,241 - 2.4
1,415,285 - 14366 mRNA_5998 0.11 0.5
1,415,334 + 14366 mRNA_5998 0.13 -0.2
1,415,355 - 14366 mRNA_5998 0.14 1.6
1,415,450 + 14366 mRNA_5998 0.18 -4.2
1,415,536 + 14366 mRNA_5998 0.21 0.1
1,415,645 + 14366 mRNA_5998 0.25 -0.5
1,415,680 - 14366 mRNA_5998 0.26 1.6
1,415,714 + 14366 mRNA_5998 0.28 -0.3
1,415,728 - 14366 mRNA_5998 0.28 -0.3
1,415,758 + 14366 mRNA_5998 0.29 -1.3
1,415,944 + 14366 mRNA_5998 0.36 1.4
1,415,993 - 14366 mRNA_5998 0.38 0.4
1,416,164 + 14366 mRNA_5998 0.45 1.5
1,416,296 - 14366 mRNA_5998 0.49 -0.4
1,416,426 + 14366 mRNA_5998 0.54 0.7
1,416,749 + 14366 mRNA_5998 0.67 1.7
1,417,182 + 14366 mRNA_5998 0.83 -0.0
1,417,298 + 14366 mRNA_5998 0.87 1.0
1,417,313 - 14366 mRNA_5998 0.88 1.1
1,417,436 - -1.3
1,417,442 - -0.5
1,417,454 + 0.8
1,417,582 + -0.4
1,417,591 + 0.0
1,417,618 + -0.0
1,417,647 - 1.8
1,417,721 + 0.4
1,417,724 - -0.1
1,417,754 + 1.2