Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5941

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5940: 14308 - KOG3975 Uncharacterized conserved protein, at 1282291 to 1283820 14308 mRNA_5941: 14309 - K14676 NTE, NRE lysophospholipid hydrolase, at 1284126 to 1289660 14309 mRNA_5942: 14310 - HMMPfam-BUD22-PF09073, at 1290149 to 1292064 14310

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,283,247 + 14308 mRNA_5940 0.62 -0.8
1,283,852 - 0.0
1,283,885 - 0.4
1,283,972 + -0.5
1,284,005 + 0.5
1,284,008 + -0.7
1,284,008 - 0.5
1,284,010 - 0.5
1,284,015 + 1.0
1,284,034 - 0.3
1,284,041 + -0.7
1,284,049 - -0.7
1,284,234 + 2.3
1,284,308 + 0.9
1,284,482 - 0.9
1,284,522 - 0.5
1,284,646 + -0.7
1,285,141 + 14309 mRNA_5941 0.18 1.7
1,285,484 + 14309 mRNA_5941 0.25 1.5
1,285,487 - 14309 mRNA_5941 0.25 0.6
1,285,634 + 14309 mRNA_5941 0.27 0.7
1,286,011 - 14309 mRNA_5941 0.34 1.7
1,286,222 + 14309 mRNA_5941 0.38 0.2
1,286,669 - 14309 mRNA_5941 0.46 1.2
1,286,875 - 14309 mRNA_5941 0.50 1.1
1,286,938 - 14309 mRNA_5941 0.51 1.3
1,287,667 - 14309 mRNA_5941 0.64 -0.5
1,287,806 + 14309 mRNA_5941 0.66 0.5
1,287,839 - 14309 mRNA_5941 0.67 -0.2
1,287,897 + 14309 mRNA_5941 0.68 0.4
1,288,023 + 14309 mRNA_5941 0.70 0.0
1,288,024 + 14309 mRNA_5941 0.70 0.9
1,288,124 - 14309 mRNA_5941 0.72 0.6
1,288,270 - 14309 mRNA_5941 0.75 -1.1
1,288,669 - 14309 mRNA_5941 0.82 2.1
1,289,273 - -0.8
1,289,397 + 1.6
1,289,400 - -0.2
1,289,447 + 1.0
1,289,518 + -3.3
1,289,737 - 0.1
1,289,793 - 1.3