Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5853

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5852: 14220 - K14856 SDA1, SDAD1 protein SDA1, at 1085996 to 1089150 14220 mRNA_5853: 14221 - K15378 SLC45A1_2_4 solute carrier family 45, member 1/2/4, at 1089276 to 1092744 14221 mRNA_5854: 14222 - K12826 SF3A2, SAP62 splicing factor 3A subunit 2, at 1093041 to 1094048 14222

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,089,277 + 0.0
1,089,325 + -0.2
1,089,601 - -0.2
1,089,893 + 14221 mRNA_5853 0.18 -0.4
1,089,910 - 14221 mRNA_5853 0.18 0.9
1,090,092 - 14221 mRNA_5853 0.24 0.7
1,090,210 + 14221 mRNA_5853 0.27 1.3
1,090,350 + 14221 mRNA_5853 0.31 -0.4
1,091,661 + 14221 mRNA_5853 0.69 1.5
1,091,942 - 14221 mRNA_5853 0.77 -1.2
1,091,962 - 14221 mRNA_5853 0.77 -1.2
1,092,154 - 14221 mRNA_5853 0.83 0.2
1,092,406 + 0.3
1,092,560 + 0.0
1,092,692 - 0.0