Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5842

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5841: 14209 - KOG1577 Aldo/keto reductase family proteins, at 1062734 to 1064125 14209 mRNA_5842: 14210 - K04508 TBL1 transducin (beta)-like 1, at 1064235 to 1067284 14210 mRNA_5843: 14211 - HMMPfam-Tim10/DDP family zinc finger-PF02953, at 1067575 to 1068136 14211

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,063,249 + 14209 mRNA_5841 0.37 0.7
1,063,256 - 14209 mRNA_5841 0.38 0.5
1,063,274 - 14209 mRNA_5841 0.39 -0.8
1,063,520 + 14209 mRNA_5841 0.56 0.8
1,063,695 - 14209 mRNA_5841 0.69 0.6
1,063,808 + 14209 mRNA_5841 0.77 -0.1
1,063,829 - 14209 mRNA_5841 0.79 -0.8
1,063,861 + 14209 mRNA_5841 0.81 0.5
1,063,869 - 14209 mRNA_5841 0.82 1.3
1,064,005 - -0.6
1,064,300 + 1.1
1,064,464 + 3.6
1,064,642 + 14210 mRNA_5842 0.13 0.8
1,064,711 + 14210 mRNA_5842 0.16 0.9
1,065,017 - 14210 mRNA_5842 0.26 1.2
1,065,179 - 14210 mRNA_5842 0.31 1.0
1,065,200 - 14210 mRNA_5842 0.32 1.1
1,065,762 - 14210 mRNA_5842 0.50 1.3
1,066,199 + 14210 mRNA_5842 0.64 -1.1
1,066,484 + 14210 mRNA_5842 0.74 -0.3
1,066,788 - 14210 mRNA_5842 0.84 -0.8
1,066,802 + 14210 mRNA_5842 0.84 1.4
1,066,832 - 14210 mRNA_5842 0.85 -0.1
1,067,816 + 14211 mRNA_5843 0.43 0.2
1,067,823 + 14211 mRNA_5843 0.44 1.6
1,067,844 + 14211 mRNA_5843 0.48 2.7
1,067,852 + 14211 mRNA_5843 0.49 1.1
1,067,943 - 14211 mRNA_5843 0.65 0.7
1,067,986 - 14211 mRNA_5843 0.73 -1.6
1,067,992 - 14211 mRNA_5843 0.74 0.8