Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5793

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5792: 14160 - K10755 RFC2_4 replication factor C subunit 2/4, at 949558 to 951302 14160 mRNA_5793: 14161 - K10581 UBE2O ubiquitin-conjugating enzyme E2 O, at 951477 to 955108 14161 mRNA_5794: 14162 - K01637 E4.1.3.1, aceA isocitrate lyase, at 955473 to 957559 14162

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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951,141 + 0.3
951,161 - 0.1
951,169 + -0.4
951,439 - -0.8
951,556 + 0.5
951,591 + -1.0
951,913 + 14161 mRNA_5793 0.12 0.2
952,332 - 14161 mRNA_5793 0.24 -0.5
952,464 - 14161 mRNA_5793 0.27 -1.1
952,679 + 14161 mRNA_5793 0.33 0.2
952,790 - 14161 mRNA_5793 0.36 1.5
953,050 - 14161 mRNA_5793 0.43 -1.0
953,081 + 14161 mRNA_5793 0.44 0.0
953,340 + 14161 mRNA_5793 0.51 -2.3
953,370 + 14161 mRNA_5793 0.52 0.5
953,600 - 14161 mRNA_5793 0.58 1.3
953,706 + 14161 mRNA_5793 0.61 0.6
953,784 - 14161 mRNA_5793 0.64 0.7
953,796 - 14161 mRNA_5793 0.64 0.1
953,811 + 14161 mRNA_5793 0.64 0.4
953,817 + 14161 mRNA_5793 0.64 0.4
954,052 + 14161 mRNA_5793 0.71 0.1
954,091 - 14161 mRNA_5793 0.72 1.3
954,092 + 14161 mRNA_5793 0.72 -1.1
954,213 - 14161 mRNA_5793 0.75 2.7
954,311 - 14161 mRNA_5793 0.78 0.4
954,429 - 14161 mRNA_5793 0.81 0.1
955,083 + -0.7
955,213 + -0.4
955,361 + 3.1
955,365 - -1.9
955,370 + 0.2
955,442 + 1.8
955,505 - -0.3
955,541 - 2.1
955,553 - 0.5
955,693 + 14162 mRNA_5794 0.11 0.3
955,696 - 14162 mRNA_5794 0.11 0.2
955,696 + 14162 mRNA_5794 0.11 3.5
955,830 + 14162 mRNA_5794 0.17 0.4